View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_high_1 (Length: 554)
Name: NF2168_high_1
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Original strand, 250330 - 250855
Alignment:
| Q |
19 |
agtttgcttgcacaccatttattctaaaatcggaattctgcgaaagatatcaatatttcttgcaaaggtatcagtatgcacagccttttattgtaccatt |
118 |
Q |
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| T |
250330 |
agtttgcttgcacaccatttattctaaaatcggaattctgcgaaagatatcaatatttcttgcaaaggtatcagtatgcacagccttttattgtaccatt |
250429 |
T |
|
| Q |
119 |
aacaacgttcaacttaagcataaccgggttaaaaaatacagataaatcataaggtattcttgagggttcaaccttcaattctcggaagaattcatgttaa |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
250430 |
aacaacgttcaactaaagcataaccgggttaaaaaatacagataaatcataaggtattcttgagggttcaacctttaattctcggaagaattcatgttaa |
250529 |
T |
|
| Q |
219 |
taactgattatccttgaggcatgattattagtagttgtcgtcgaaaacagagtttgtatcaactggttttaactatttctatcattatcaagggcgaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250530 |
taactgattatccttgaggcatgattattagtagttttcgtcgaaaacagagtttgtatcaactggttttaactatttctatcattatcaagggcgaaaa |
250629 |
T |
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| Q |
319 |
ttccatctgtttattagtatcatttatcactaaatgcacgcattgaaatgaagtcaatgaatagttacatcataggaccagtaaattaccccgtcagaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250630 |
ttccatctgtttattagtatcatttatcactaaatgcacgcattgaaatgaagtcaatgaatagttacatcataggaccagtaaattaccccgtcagaaa |
250729 |
T |
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| Q |
419 |
tgaattcttggtttgcaaaatcaagttatactccaatcaaacttgaaaaaagaaatttgtaaagagactaaaagggtacccccaatgagaacaagaaaat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250730 |
tgaattcttggtttgcaaaatcaagttatactccaatcaaacttgaaaaaagaaatttgtaaagagactaaaagggtacccccaatgagaacaagaaaat |
250829 |
T |
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| Q |
519 |
taaatgtgttcatttttacacctatg |
544 |
Q |
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|||||||||||||||||||||||||| |
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| T |
250830 |
taaatgtgttcatttttacacctatg |
250855 |
T |
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