View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_high_10 (Length: 303)
Name: NF2168_high_10
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 4155224 - 4155131
Alignment:
| Q |
27 |
taagaagtgtaccacgtctggatatatattaatggcgcaggcctcgatcgtgtttagatagcattcatcatttccatgctgcaattattgaagg |
120 |
Q |
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| T |
4155224 |
taagaactgtaccacgtctggatatatattaatggcgcaggcctcgatcgtgtttagatagcattcatcatttccatgctgcaattattgaagg |
4155131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 4155008 - 4154902
Alignment:
| Q |
182 |
aacattttcttataattatggatatgcatatattccagttttaaaaagaggtgatttatagtgaattttaaacnnnnnnnnnaaggaagtgaatttttaa |
281 |
Q |
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| T |
4155008 |
aacattttcttataattatggacatacatatattccagttttaaaaagaggtgatttataatgaattttaaac-ttttttttaaggaagtgaatttttaa |
4154910 |
T |
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| Q |
282 |
cttgaaat |
289 |
Q |
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| T |
4154909 |
cttgaaat |
4154902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 4160396 - 4160300
Alignment:
| Q |
19 |
ttcataggtaagaagtgtaccacgtctggatatatattaatggcgcaggcctcgatcgtgtttagatagcattcatcatttccatgctgcaattatt |
115 |
Q |
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| T |
4160396 |
ttcataggtaggaactgtaccacgtctgcatatgctttaatggtgcaggcctcgatcgagtttagcaagcattcatcatttccatgctgcaattatt |
4160300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 4155076 - 4155021
Alignment:
| Q |
143 |
gcaagtggttttcattagataacttaaaagtgacttgataacattttcttataatt |
198 |
Q |
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| T |
4155076 |
gcaagtggttttcatgagataacttaaaagtgacttgttaacattttcttataatt |
4155021 |
T |
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