View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_high_13 (Length: 268)
Name: NF2168_high_13
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_high_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 29631833 - 29632083
Alignment:
| Q |
18 |
aactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgc |
117 |
Q |
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| T |
29631833 |
aactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgc |
29631932 |
T |
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| Q |
118 |
gagcttgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtggttgtgggtggtttagacaaacgtatacagg |
217 |
Q |
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| T |
29631933 |
gagcttgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtggttgtgggtggtttagacaaacgtattcagg |
29632032 |
T |
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| Q |
218 |
caaaacaattggtagccaggcctaaccttgttatcgccactccagagaggc |
268 |
Q |
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| T |
29632033 |
caaaacaattggtagccaggcctaaccttgttatcgccactccagagaggc |
29632083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 29630715 - 29630976
Alignment:
| Q |
19 |
actggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtgagactcc------ttttggtgtg------tttgctcttgtactga |
106 |
Q |
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| T |
29630715 |
actggtagtggtaaaacggcagcttttgcgcttcccattcttcaacgcctcgccgagcatccgaaacctttcggtgtgtatgtgtttgctctcgtgctga |
29630814 |
T |
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| Q |
107 |
cgcccacccgcgagcttgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtggttgtgggtggtttagacaa |
206 |
Q |
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| T |
29630815 |
cgcccacgcgcgagcttgcgattcagctggcagaccagtttttggcccttgggtcctcgctcctccccagccttacggttgttgtgggtgattatgacag |
29630914 |
T |
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| Q |
207 |
acgtatacaggcaaaacaattggtagccaggcctaaccttgttatcgccactccagagaggc |
268 |
Q |
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| T |
29630915 |
tcctacacaggcaaaataattggtagccagtcctcaccttgttatcgccactccagagaggc |
29630976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 27664016 - 27663897
Alignment:
| Q |
18 |
aactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgc |
117 |
Q |
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| T |
27664016 |
aactggaagcggtaaaacagcggcatttgcgcttccgattctgcagcggcttgctgaacatacgtttggtgtgtttgcgcttgtggtgacgcccacgcgc |
27663917 |
T |
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| Q |
118 |
gagcttgcggttcagctggc |
137 |
Q |
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| T |
27663916 |
gagcttgcgtttcagttggc |
27663897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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