View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2168_high_15 (Length: 248)

Name: NF2168_high_15
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2168_high_15
NF2168_high_15
[»] chr3 (8 HSPs)
chr3 (1-236)||(53058917-53059154)
chr3 (20-221)||(53062113-53062320)
chr3 (27-213)||(53067876-53068059)
chr3 (27-220)||(37418210-37418400)
chr3 (29-220)||(53341007-53341201)
chr3 (47-141)||(53972116-53972210)
chr3 (58-127)||(23224663-23224732)
chr3 (59-123)||(49857857-49857921)
[»] chr7 (10 HSPs)
chr7 (27-213)||(31013642-31013828)
chr7 (38-134)||(11377380-11377476)
chr7 (35-90)||(11374242-11374297)
chr7 (28-141)||(12646303-12646416)
chr7 (32-134)||(12539862-12539964)
chr7 (47-135)||(47606602-47606690)
chr7 (47-137)||(20001155-20001245)
chr7 (34-134)||(12483384-12483484)
chr7 (34-134)||(12504814-12504914)
chr7 (32-87)||(12623777-12623833)
[»] chr2 (2 HSPs)
chr2 (22-162)||(6687163-6687306)
chr2 (99-155)||(44253247-44253303)
[»] chr8 (2 HSPs)
chr8 (35-134)||(35396089-35396188)
chr8 (62-137)||(5387801-5387876)
[»] chr4 (1 HSPs)
chr4 (50-123)||(56164454-56164527)
[»] chr1 (1 HSPs)
chr1 (18-90)||(15330472-15330544)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 53059154 - 53058917
Alignment:
Q  1 ttcgttcatgaaggctgtttggtcgatgaaatcga--gagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgt 98  Q
    ||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059154 ttcgttcatgaaggctgtttggtcgatgaaatcgttcgagtgaggactgagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgt 53059055  T
Q  99 ctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgctt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059054 ctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgctt 53058955  T
Q  199 cttcgacttggacatggcagttaataatattattgcct 236  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53058954 cttcgacttggacatggcagttaataatattattgcct 53058917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 53062320 - 53062113
Alignment:
Q  20 tggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggaga 119  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062320 tggtcggtgaaatcgagagtgaagacatagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggaga 53062221  T
Q  120 gaatgtgacagat-----aattgagtccggaagggag-ctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 213  Q
    |||||||||||||     | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062220 gaatgtgacagatagttgagttgagtctggaagggagactaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 53062121  T
Q  214 ggcagtta 221  Q
    ||||||||    
T  53062120 ggcagtta 53062113  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 53068059 - 53067876
Alignment:
Q  27 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 126  Q
    |||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53068059 tgaaattgagagtgaagactgagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 53067960  T
Q  127 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 213  Q
    | ||||||| ||||||||||||||||||||| |||  | |||||| |||||||||||   ||||||| |||||||||||||||||||    
T  53067959 atagataatcgagtccggaagggagctaaccttgttgcgctcttctattggaatcga---tgatcgccgcttcttcgacttggacat 53067876  T

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Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 37418400 - 37418210
Alignment:
Q  27 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 126  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  37418400 tgaaatcgagggtgaagactgagagccacaatgggttccacctctttgagaggatgcttgtggcgacagtgtctttggttgggagaaaggagagaatatg 37418301  T
Q  127 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 220  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||  ||||||||    ||||||| |||||||||||||||||||| ||||||    
T  37418300 acagataattgagtctggaagggagctaaccctgtcgcacttttctgttggaatc---catgatcgttgcttcttcgacttggacatcgcagtt 37418210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 53341007 - 53341201
Alignment:
Q  29 aaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgac 128  Q
    ||||||||||||||||| ||||  || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53341007 aaatcgagagtgaggactgagatacataatggtttccacctctttgagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgac 53341106  T
Q  129 agataattgagtccggaagggagctaaccctg------tcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 220  Q
    ||||||||||||| ||||||||||||||||||      ||||||||||| ||||| |||   ||||||||||||||||| ||||| ||||| ||||||    
T  53341107 agataattgagtctggaagggagctaaccctgtcgtactcacactcttctattggtatc---gatgatcgctgcttcttggactttgacatcgcagtt 53341201  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 53972116 - 53972210
Alignment:
Q  47 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtc 141  Q
    |||| ||| ||||| ||||||||||| ||||||||| |||||| | ||| |||||||||||| ||||| ||||| |||| | |||||||||||||    
T  53972116 gagatccataatggcttccacctctttgagaggatggttgtgggggcggagtctttggttggaagaaaagagagtatgtaagagataattgagtc 53972210  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 23224663 - 23224732
Alignment:
Q  58 tggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 127  Q
    ||||||||| ||||  ||||| ||||||||| || | ||||||||||| || ||| ||||||||||||||    
T  23224663 tggtttccatctctctgagagaatgcttgtgacggctgtgtctttggtgggaagacaggagagaatgtga 23224732  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 49857857 - 49857921
Alignment:
Q  59 ggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 123  Q
    |||||||||||||||||||||| | ||||||||  || |||||| |  || ||||||||||||||    
T  49857857 ggtttccacctcttggagaggacggttgtggcggtggcgtctttcgacggaagaaaggagagaat 49857921  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 31013828 - 31013642
Alignment:
Q  27 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 126  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31013828 tgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtg 31013729  T
Q  127 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 213  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||    | | ||||||||||||||||||    
T  31013728 acagataattgagtccggaagggagctatccctgtcgcactcttctattggaatcgatgatcgctgattcttcttcgacttggacat 31013642  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 11377476 - 11377380
Alignment:
Q  38 gtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 134  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| | |  |||||||| || ||||| ||||| ||||| |||||||    
T  11377476 gtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggcggcagattctttggtaggaagaaaagagaggatgtggcagataa 11377380  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 11374297 - 11374242
Alignment:
Q  35 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 90  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||    
T  11374297 agagtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggc 11374242  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 12646416 - 12646303
Alignment:
Q  28 gaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 127  Q
    ||||| |||||||||||  ||  ||||||| |||||||| || |||||||||||| |||| ||| |||  | || ||| |||||||| |||||||||||     
T  12646416 gaaatggagagtgaggagtgaatgccacaaaggtttccatcttttggagaggatggttgttgcggcggattgttgggtagggagaaatgagagaatgtgg 12646317  T
Q  128 cagataattgagtc 141  Q
    |||||||| |||||    
T  12646316 cagataatggagtc 12646303  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 12539964 - 12539862
Alignment:
Q  32 tcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacaga 131  Q
    ||||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| ||||||||||| ||||    
T  12539964 tcgagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagagagaatgtggcaga 12539865  T
Q  132 taa 134  Q
    |||    
T  12539864 taa 12539862  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 47606602 - 47606690
Alignment:
Q  47 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataat 135  Q
    |||||||| | ||| ||||| ||||| |||||||||||||| ||  || ||  ||||||||||||||| || ||||||||||| |||||    
T  47606602 gagagccatagtgggttccatctctttgagaggatgcttgtagctgcgctgagtttggttgggagaaaagatagaatgtgacatataat 47606690  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 20001155 - 20001245
Alignment:
Q  47 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 137  Q
    |||||||| | ||||||||| ||||| |||||||||||||||||  | | || ||| || |||||||| || || |||||||| |||||||    
T  20001155 gagagccatattggtttccatctcttagagaggatgcttgtggcagcagagttttttgtcgggagaaaagaaaggatgtgacaaataattg 20001245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 12483484 - 12483384
Alignment:
Q  34 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 133  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12483484 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12483385  T
Q  134 a 134  Q
    |    
T  12483384 a 12483384  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 12504914 - 12504814
Alignment:
Q  34 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 133  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12504914 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12504815  T
Q  134 a 134  Q
    |    
T  12504814 a 12504814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 12623777 - 12623833
Alignment:
Q  32 tcgagagtgaggacagagagccacaatgg-tttccacctcttggagaggatgcttgt 87  Q
    ||||||||||| || ||||||||||| || |||||| || |||||||||||||||||    
T  12623777 tcgagagtgagaactgagagccacaacggatttccatcttttggagaggatgcttgt 12623833  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 6687306 - 6687163
Alignment:
Q  22 gtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacgg---tgtctttggttgggagaaaggag 118  Q
    |||||||||||||||||| | ||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |   ||||||||||||| ||||| |||    
T  6687306 gtcgatgaaatcgagagttaagactgagagccataatggtttccatctcttcgagaggatgcttgtggcgacagtactgtctttggttggaagaaatgag 6687207  T
Q  119 agaatgtgacagataattgagtccggaagggagctaaccctgtc 162  Q
    ||||| ||||| ||||||||||  ||||||||||||||||||||    
T  6687206 agaatatgacaaataattgagtatggaagggagctaaccctgtc 6687163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 44253303 - 44253247
Alignment:
Q  99 ctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaa 155  Q
    |||||||||| ||||| |||||||||||| | |||||||| || |||| ||||||||    
T  44253303 ctttggttggaagaaaagagagaatgtgagatataattgaatctggaaaggagctaa 44253247  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 35396188 - 35396089
Alignment:
Q  35 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 134  Q
    ||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||| | | |  | |||||| |||||||| ||||||||||| |||||||    
T  35396188 agagtgaggacggagagccacaatgggttccatctcttagagaggatgctagtggtggcagattgtttggtagggagaaacgagagaatgtggcagataa 35396089  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 5387801 - 5387876
Alignment:
Q  62 ttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 137  Q
    ||||||||| | |||||||||||||||| | | |||| |||||| || ||||| ||||||||| |||| |||||||    
T  5387801 ttccacctcgttgagaggatgcttgtggtggccgtgtgtttggtaggaagaaaagagagaatgagacaaataattg 5387876  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 56164527 - 56164454
Alignment:
Q  50 agccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 123  Q
    ||||| ||||| ||||||  ||| ||||||| |||||||||||| | |||||||||||||||||| ||||||||    
T  56164527 agccataatggattccactgcttcgagaggacgcttgtggcgaccgagtctttggttgggagaaaagagagaat 56164454  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 15330472 - 15330544
Alignment:
Q  18 tttggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 90  Q
    ||||||||  ||| ||||||||||| || ||  |||||||||| | ||| || ||||||||||||||||||||    
T  15330472 tttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttttggagaggatgcttgtggc 15330544  T

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