View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_high_3 (Length: 473)
Name: NF2168_high_3
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 7622548 - 7623004
Alignment:
| Q |
15 |
aagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622548 |
aagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaa |
7622647 |
T |
|
| Q |
115 |
cttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622648 |
cttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtt |
7622747 |
T |
|
| Q |
215 |
taatctcataaccatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7622748 |
taatctcataaccatctatgttacaactttctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctctttcactactgattt |
7622847 |
T |
|
| Q |
315 |
aagataaggaagcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622848 |
aagataaggaagcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattg |
7622947 |
T |
|
| Q |
415 |
ttcatcaatgctgtcatagcccaaaccactactgctgaacttgtctctgctcctgca |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
7622948 |
ttcatcaatgctgtcatagcccaaaccactactgctgaacttgtgtctgttcctgca |
7623004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 7627099 - 7627555
Alignment:
| Q |
15 |
aagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627099 |
aagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaa |
7627198 |
T |
|
| Q |
115 |
cttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627199 |
cttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtt |
7627298 |
T |
|
| Q |
215 |
taatctcataaccatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627299 |
taatctcataaccatctatgttacaactttctattgtttctcttggcaatagtaatggtgatggagggaataatcttaatgtctctttcactactgattt |
7627398 |
T |
|
| Q |
315 |
aagataaggaagcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7627399 |
aagataaggaagcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattg |
7627498 |
T |
|
| Q |
415 |
ttcatcaatgctgtcatagcccaaaccactactgctgaacttgtctctgctcctgca |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |
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|
| T |
7627499 |
ttcatcaatgctgtcatagcccaaaccactgctgctgaacttgtgtctgttcctgca |
7627555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Original strand, 7634235 - 7634690
Alignment:
| Q |
15 |
aagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||| |
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|
| T |
7634235 |
aagctcaacagtgaccactcccatgttcattgcaggacacattcttcttccacttccaaatggaattagctcaaaatttttccctttaaagtccactgaa |
7634334 |
T |
|
| Q |
115 |
cttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcattaacatagactagagtttttggtt |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
7634335 |
ctcataatgaacctttcaggataaaactcttcagggtctttccaattctcaggatcccttcctatggcccatgcattaacatacactaaagtttttggtt |
7634434 |
T |
|
| Q |
215 |
taatctcataaccatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagggaataatcttaatgtctctttcactactgattt |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||||||| | |||||||||||| |||| ||| |
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|
| T |
7634435 |
taatctcataaccatctatgttacaattttctattgtttctcttggtactagtaatggtgatggtggaaataatctcattgtctctttcaccactgcttt |
7634534 |
T |
|
| Q |
315 |
aagataaggaagcttttcaatatcatcttcatttataaaatctttgtcttcatataagtttctgatttccatttgaaccttgttcatcactcttggattg |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7634535 |
aagataaggtagcttttcaatatcatcttcatttataaaatatttgtcttcatataagtttctgatttccatttgaaccttgttcatcactctaggattg |
7634634 |
T |
|
| Q |
415 |
ttcatcaatgctgtcatagcccaaaccactactgctgaacttgtctctgctcctgc |
470 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
7634635 |
ttcatcaatgttgtcatagcccaaaccactattgctgaacttgtgtctgttcctgc |
7634690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 22941586 - 22941495
Alignment:
| Q |
49 |
ggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaa |
140 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| || || ||| |||| || ||||| ||| ||||||||||||||||| |
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|
| T |
22941586 |
ggacacattcttcttccagcaccaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaa |
22941495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 22986263 - 22986410
Alignment:
| Q |
47 |
caggacacattcttcttccacttccaaatggaatcaactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttc |
146 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||| |||||||||| | ||||| ||||| | ||||| ||| ||||| ||||||||||||| || |
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|
| T |
22986263 |
caggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatc |
22986362 |
T |
|
| Q |
147 |
agggtcattccaattctcaggatcccttgctatggcccatgcattaac |
194 |
Q |
| |
|
||||||||||||| | |||||||| | | |||||||| |||||||| |
|
|
| T |
22986363 |
ggggtcattccaatatttaggatcccgtccaatggcccaagcattaac |
22986410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 22916886 - 22916834
Alignment:
| Q |
49 |
ggacacattcttcttccacttccaaatggaatcaactcaaaattcttcccttt |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
22916886 |
ggacacattcttctgccactgccaaacggaatgaactcaaaattattaccttt |
22916834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 22932201 - 22932253
Alignment:
| Q |
49 |
ggacacattcttcttccacttccaaatggaatcaactcaaaattcttcccttt |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
22932201 |
ggacacattcttctgccactgccaaacggaatgaactcaaaattattaccttt |
22932253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 23610280 - 23610347
Alignment:
| Q |
124 |
aacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcatt |
191 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| | |||||||||| |||| ||||| ||||| |
|
|
| T |
23610280 |
aacctttcaggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcatt |
23610347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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