View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_high_4 (Length: 437)
Name: NF2168_high_4
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 3075922 - 3076193
Alignment:
| Q |
8 |
gagcacagagcaaccacacgattgagttggacacgacactttaactcaaaatcttaaggcaattttaaacaattatgctacaatcatacgagcttaatcg |
107 |
Q |
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| T |
3075922 |
gagctcagagcaaccacacgattgagttggacacgacactttaactcaaaatcttaaggcaattttaaacaattatgctacaatcatacgagcttaatcg |
3076021 |
T |
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| Q |
108 |
caataagtattcactgtaagtttgggtttgctataataactaac----nnnnnnnnnnaataataactctaacttgtcatgtatttctttgtagtgtaac |
203 |
Q |
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| T |
3076022 |
cagtaagtatccactgtaagtttgggtttgctataataactaactttttttttgaacgaataataactctaagttgtcatgtatttctttgtagtgtaac |
3076121 |
T |
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| Q |
204 |
aatggctctcgtttaatttcttatatcataatatacaccaaacacagaaaaagataccactaaatgtaccac |
275 |
Q |
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| T |
3076122 |
aatggctctcgtttaatttctaatatcataatatacaccaaacacagaaaaagataccactaaatgtaccac |
3076193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 329 - 418
Target Start/End: Original strand, 3076246 - 3076335
Alignment:
| Q |
329 |
ctatccacatgatcatcttgatccattgttccgaaaattatatacacaacgggatcatctaatttaaataagtattcacaatgggacaat |
418 |
Q |
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| T |
3076246 |
ctatccacatgatcatcttgatccattgttccgaaaattatatacacaacgggattatcgaatttaaataagtattcacaatgggacaat |
3076335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 2336761 - 2336706
Alignment:
| Q |
13 |
cagagcaaccacacgattgagttggacacgacactttaactcaaaatcttaaggca |
68 |
Q |
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| T |
2336761 |
cagagcaaccacacaagtgagttggacaccacatcttaacccaaaatcttaaggca |
2336706 |
T |
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