View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2168_high_9 (Length: 321)
Name: NF2168_high_9
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_high_9 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 6555198 - 6555504
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||| |
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|
| T |
6555198 |
agaccttacatacactggtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttaaaagactgttatcaattgactgag |
6555297 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcaga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6555298 |
ctcccttcaaatttttccaaactcatcaatttacgtcatcttgagctcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcaga |
6555397 |
T |
|
| Q |
201 |
ccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6555398 |
ccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttggg |
6555497 |
T |
|
| Q |
301 |
taatgtc |
307 |
Q |
| |
|
||||||| |
|
|
| T |
6555498 |
taatgtc |
6555504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 25 - 306
Target Start/End: Original strand, 6520916 - 6521197
Alignment:
| Q |
25 |
aagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactc |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| | | | || || ||||||||||||| ||||||||||||||||||||| |
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|
| T |
6520916 |
aagcttacctgataccatttgtatgctgtataatttacaaacactcttgttaaaaggctgccatcaattgactgagctcccttcaaatttttccaaactc |
6521015 |
T |
|
| Q |
125 |
atcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaag |
224 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
6521016 |
atcaatttacgtcatcttgagctcccttgtataaagaaaatgccaaagaatatgggaaagctaagtaatcttcagaccctgtcatattttattgtggaag |
6521115 |
T |
|
| Q |
225 |
cccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaatgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6521116 |
cccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaatgt |
6521197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 52 - 307
Target Start/End: Original strand, 6527683 - 6527938
Alignment:
| Q |
52 |
gtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatcttgagatccct |
151 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6527683 |
gtataatttgcaaactctcttgttgggaggttgtggtgaattgactgagctcccttcaaatttttccaaactcatcaatttacgtcatcttgagctccct |
6527782 |
T |
|
| Q |
152 |
tgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatt |
251 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527783 |
tgtataaataaaatcccaaagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatt |
6527882 |
T |
|
| Q |
252 |
tggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaatgtc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6527883 |
tggcaaaactcaaccatcttcatggaacaattcatattaaaggcttgggtaatgtc |
6527938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 6735259 - 6734923
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| | ||||||||||| |
|
|
| T |
6735259 |
agacctttcatacactaagattagaagcttacctgataccatttgtatgttgtataatttacaaacactcttgttaaaaggttgtcgtcaattgactgag |
6735160 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatcttgagatcccttgt---------------------ataaagaaaatgccaaagaatatgg |
179 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||| |
|
|
| T |
6735159 |
ctcccttcaaatttttccaaactcgtcaatttatgtcatcttgaactcccttgtgataattttggagaccctcgtataaagaagatgccaaagcatatgg |
6735060 |
T |
|
| Q |
180 |
gaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaac |
279 |
Q |
| |
|
|||||||||| |||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6735059 |
gaaagctaaacaatcttcaaagcctatcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccagcttcatggaac |
6734960 |
T |
|
| Q |
280 |
aattcatattaaagggttgggtaatgtctgtgctcct |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
6734959 |
aattcatattaaagggctgggtaatgtcagtgatcct |
6734923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 2 - 283
Target Start/End: Original strand, 6480716 - 6480994
Alignment:
| Q |
2 |
gacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagc |
101 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| | | ||| ||||||||||||| |
|
|
| T |
6480716 |
gacctttctttcactgagattacaagcttacctgatagcatttgtatgttgtataatttgcaaacaatcttgttgcaagggtgt---gaattgactgagc |
6480812 |
T |
|
| Q |
102 |
tgccttcaaatttttccaaactcatcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcagac |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||| |||| ||||||||||| | |||||| || |
|
|
| T |
6480813 |
tcccttcaaatttttccaaactcatcaatttacgtcatcttgaactcccttatttaaagaagatgccaaagcatataggaaagctaaacagtcttcaaac |
6480912 |
T |
|
| Q |
202 |
cttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaatt |
283 |
Q |
| |
|
|| | |||||| ||||||||| | |||| ||||||||||||||| |||| |||||| |||||||||||||||| |||| |
|
|
| T |
6480913 |
actgccttattttgttgtggaagagaaaaatggatctgatctcaaagagttggaaaaactaaaccatcttcatggaaaaatt |
6480994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 6946574 - 6946269
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaa-ttgactga |
99 |
Q |
| |
|
|||||||||| ||||| ||||| ||| ||||| ||| | |||||||||||||||||||||||||||||||| ||| | | ||| | ||| ||||| || |
|
|
| T |
6946574 |
agacctttctcacactaatattacaaggttacccgattctatttgtatgttgtataatttgcaaacactcttattgcaaggctgt-aggaagttgacaga |
6946476 |
T |
|
| Q |
100 |
gctgccttcaaatttttccaaactcatcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcag |
199 |
Q |
| |
|
||| ||||||||||| || |||||| ||||||||||||||||||| | ||| |||||||||| ||||||||| |||| ||||| ||||| ||||||||| |
|
|
| T |
6946475 |
gctcccttcaaatttctcaaaactcgtcaatttacgtcatcttgaacttcctagtataaagaagatgccaaagcatataggaaatctaaacaatcttcag |
6946376 |
T |
|
| Q |
200 |
accttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgg |
299 |
Q |
| |
|
|||| | |||||||||||||||| || ||||| |||||||| || || |||| ||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6946375 |
gccttaccttattttattgtggaagagcagaatgagtctgatcttaaggagttggggaaactaaaccatcttcatggaacaattgatattaaagggttgg |
6946276 |
T |
|
| Q |
300 |
gtaatgt |
306 |
Q |
| |
|
||||||| |
|
|
| T |
6946275 |
gtaatgt |
6946269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 306
Target Start/End: Complemental strand, 8453928 - 8453633
Alignment:
| Q |
29 |
ttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactcatca |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| || | | |||| ||||||||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
8453928 |
ttacctgataccatttgtatgttgcataatttgcaaacactcttgctggaaggctgttgtgaattgacagagctcccttcaaatttttccaaactcgtca |
8453829 |
T |
|
| Q |
129 |
atttacgtcatcttgagat------------------cccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcagaccttgtcata |
210 |
Q |
| |
|
|||||||||||||| | | ||||||||| |||| ||||||||| ||| |||||||||||| |||||||| | ||||||||| |
|
|
| T |
8453828 |
atttacgtcatcttaaacttccaagtcataatggacgcccttgtattaagacgatgccaaagcatacgggaaagctaaacaatcttcaaagcttgtcata |
8453729 |
T |
|
| Q |
211 |
ttttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaatgt |
306 |
Q |
| |
|
|||||||||||||| || |||| ||||||||| ||||| ||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
8453728 |
ttttattgtggaagagcagaatgtatctgatcttaaagagttggcaaaactaaaccatcttcatggagcaattgatattgaagggttgggtaatgt |
8453633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 8589037 - 8588735
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | | || | | | | ||| |
|
|
| T |
8589037 |
agacctttcttacactttgattacaagcttacctgataccatttgtatgttgtataatttacaaacactcttgttggaacggtg---taacatcagagag |
8588941 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcaga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||| | |||||| | || |||||||||||| || | ||||||||| | ||||||||| |
|
|
| T |
8588940 |
ctcccttcaaatttttccaaactcatcaatttacgccatcttaaactcccttatgaaacaaaaatgccaaagcatgtaggaaagctagagaatcttcagt |
8588841 |
T |
|
| Q |
201 |
ccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttggg |
300 |
Q |
| |
|
|||| | |||||||| ||||| ||||| | | ||||||| || || || | || | |||||||||||||| | ||||||||| ||||| ||||| |
|
|
| T |
8588840 |
cctttccttattttataatggaaaagcataacggagctgatcttaaggagttagagaatttaaaccatcttcatgggaaaattcatataaaaggtttggg |
8588741 |
T |
|
| Q |
301 |
taatgt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
8588740 |
taatgt |
8588735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 6449545 - 6449830
Alignment:
| Q |
19 |
tattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttcc |
118 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | | || || | | || || || |||||||||||| |
|
|
| T |
6449545 |
tattacaagcttacctgataccatttgtgtgttgtataatttgcaaacactcttgttgcaa---ggaaatcaacttgcagatctcccctcaaatttttcc |
6449641 |
T |
|
| Q |
119 |
aaactcatcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcagaccttgtcatattttattg |
218 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| | ||| ||| || |||| | | || ||||||||| | ||||||| ||||| | |||||| ||| |
|
|
| T |
6449642 |
aaactcatcaatctacgtcatcttgaactcccttatgtaacgaagattccaacgcacataggaaagctagagaatcttcgagccttgccttatttttttg |
6449741 |
T |
|
| Q |
219 |
tggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaatgtc |
307 |
Q |
| |
|
||||| || || | || |||||| || || ||| ||||| ||||||||||| |||| |||| |||| ||||||||||||||||| |
|
|
| T |
6449742 |
tggaaaagcagaaaggatatgatcttaaggagttgaagaaactaaaccatcttcaaggaaaaatttatatagaagggttgggtaatgtc |
6449830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 5279959 - 5279821
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
|||||||||||||||| | |||| |||| |||||||| |||||||| |||||||||||||||| |||||||| ||| | | || | |||||||||| |
|
|
| T |
5279959 |
agacctttcttacactggaattacaagcctacctgattccatttgtgtgttgtataatttgcagacactcttattgctaggatg---tagattgactgag |
5279863 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
5279862 |
ctcccttcaaatttttacaaacttgtcaatttacgtcatctt |
5279821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 307
Target Start/End: Original strand, 6729555 - 6729758
Alignment:
| Q |
104 |
ccttcaaatttttccaaactcatcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcagacct |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||| | ||| ||| || |||||| | || ||||||||| | ||||||| ||| |
|
|
| T |
6729555 |
ccttcaaatttttccaaactcatcaatctacgtcatcttgaactcccttatgtaacgaagattccaaagcacataggaaagctagagaatcttcgagcct |
6729654 |
T |
|
| Q |
204 |
tgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaa |
303 |
Q |
| |
|
|| | |||||| |||||||| || || | || |||||| || || |||| ||||| ||||||||||| |||| |||| |||| ||||||||||||| |
|
|
| T |
6729655 |
tgccttatttttttgtggaaaagcagaaaggatatgatcttaaggagttggagaaactaaaccatcttcaaggaaaaatttatatagaagggttgggtaa |
6729754 |
T |
|
| Q |
304 |
tgtc |
307 |
Q |
| |
|
|||| |
|
|
| T |
6729755 |
tgtc |
6729758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 6899373 - 6899256
Alignment:
| Q |
25 |
aagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactc |
124 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |||||||| || | |||||| | || |||||||||| |||||| |||||| ||||||| |
|
|
| T |
6899373 |
aagcttacctgattccatttgtatgctgtataatttgcagacactcttactgcaaggttgttttaaactgactgagctcccttcagatttttgcaaactc |
6899274 |
T |
|
| Q |
125 |
atcaatttacgtcatctt |
142 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
6899273 |
gtcaatctacgtcatctt |
6899256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6168200 - 6168059
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||||||||||| ||||||||||||| || ||||| || | |||| | ||||||||||| |
|
|
| T |
6168200 |
agacctttcttacaccgacattacaagcttacctaattccatttgtatgctgtataatttgcatacgctcttactggaagaatgttttaaattgactgag |
6168101 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6168100 |
ctcccatcaaattttggcaaactcatcaatttacgtcatctt |
6168059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 7749287 - 7749170
Alignment:
| Q |
25 |
aagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactc |
124 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||| |||||||||||| | |||| |||| |||||||||||||| |||||| ||||||| |
|
|
| T |
7749287 |
aagcttacccaattccatttgtatgctgtataatttgcagacactcttgttggaacaatgtttcagattggctgagctgccttcagatttttgcaaactc |
7749188 |
T |
|
| Q |
125 |
atcaatttacgtcatctt |
142 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7749187 |
atcaatttacgtcatctt |
7749170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13271273 - 13271414
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| || |||||| ||| | |||| | || | |||| |
|
|
| T |
13271273 |
agacctttcttacaccgagattacaagcttacctgattccatttgtatgttgtataatttgcatacgctcttgctgaaagaatgttttaaactacttgag |
13271372 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13271373 |
ctcccgccaaatttttgcaaactcatcaatttacgtcatctt |
13271414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6141595 - 6141454
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||||||||| | ||||||||||||| || ||||| || | |||| | ||||||||||| |
|
|
| T |
6141595 |
agacctttcttacacggagattacaagcttacctaattccatttgtaagctgtataatttgcataccctcttactggaagaatgttttaaattgactgag |
6141496 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6141495 |
ctcccatcaaatttttgcaaactcgtcaatttacgtcatctt |
6141454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6238062 - 6237921
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||| || ||||| | | |||| | |||||||| || |
|
|
| T |
6238062 |
agacctttcttacactgaaattacaagcttacctaattccatttgcatgttgtataatttgcatacgctcttaccggaagaatgttttaaattgactaag |
6237963 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || |||||||||| |||||| |||||||||||||||||| |
|
|
| T |
6237962 |
ctcccatcaaatttttgcaaacttatcaatttacgtcatctt |
6237921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6258511 - 6258370
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||| |||||||| || | |||| | || |||||||| |
|
|
| T |
6258511 |
agacctttcttacaccgagattacaagtttacctgattccatttgtatgttgtataatttgcatacactcttactggaagaatgttttaaactgactgag |
6258412 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || ||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
6258411 |
ctcccatcaaattttcacaatctcatcaatttatgtcatctt |
6258370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 5263083 - 5262945
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
|||||||||||||||| | |||| |||| |||||||| |||||| | |||||||||||||||| |||||||| ||| | | || | ||||||| ||| |
|
|
| T |
5263083 |
agacctttcttacactgggattacaagcctacctgattccatttatgtgttgtataatttgcagacactcttattgctaggatg---taaattgacggag |
5262987 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| |||||| |||||| |||||| |||||||||| |||||| |
|
|
| T |
5262986 |
ctcccttcagatttttataaactcgtcaatttacgccatctt |
5262945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6264994 - 6264853
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||||||||| | |||||| |||||| || ||||| || | |||| | ||||||||||| |
|
|
| T |
6264994 |
agacctttcttacacagagattacaagcttacctaattccatttgtaagctgtatagtttgcataccctcttactggaagaatgttttaaattgactgag |
6264895 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
6264894 |
ctcccatcaaatttttgcaaactcgtcaatttacgtcatctt |
6264853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6244602 - 6244461
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||| || ||||| || | |||| | || | |||| |
|
|
| T |
6244602 |
agacctttcttacaccgagattacaagcttacctaattccatttgtatgttgtataatttgcatacgctcttactggaagaatgttttaaactacttgag |
6244503 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6244502 |
ctcccgccaaatttttgcaaactcatcaatttacgtcatctt |
6244461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 6592097 - 6592214
Alignment:
| Q |
25 |
aagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttccaaactc |
124 |
Q |
| |
|
|||||||||| || ||||||||| | ||||||||||||||||| |||| ||| | |||| | ||||||| || || |||||| ||||| ||||||| |
|
|
| T |
6592097 |
aagcttacctaattccatttgtacgctgtataatttgcaaacattcttattggaagaatgttttaaattgaccgaactcccttcagattttcacaaactc |
6592196 |
T |
|
| Q |
125 |
atcaatttacgtcatctt |
142 |
Q |
| |
|
|||||||| || |||||| |
|
|
| T |
6592197 |
atcaatttgcgccatctt |
6592214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 6839722 - 6839781
Alignment:
| Q |
83 |
tgttatgaattgactgagctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||||| ||| |||||| |||||| |
|
|
| T |
6839722 |
tgttatgaattgactgaactcccttcaaatttttacaaactagtcagtttacgccatctt |
6839781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 6881801 - 6881754
Alignment:
| Q |
25 |
aagcttacctgataccatttgtatgttgtataatttgcaaacactctt |
72 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| || |||||||| |
|
|
| T |
6881801 |
aagcttacctaattccatttgtatgttgtataatttacagacactctt |
6881754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 8569709 - 8569831
Alignment:
| Q |
20 |
attaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgagctgccttcaaatttttcca |
119 |
Q |
| |
|
|||||||| || |||||| ||||||||| |||||||||||| |||||||| | ||| | |||| ||||||||| |||| |||||| |||||| || |
|
|
| T |
8569709 |
attaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagaatgttctgaattgaccaagctcccttcatatttttaca |
8569808 |
T |
|
| Q |
120 |
aactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
8569809 |
aacttgccaatttacgccatctt |
8569831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 5249381 - 5249328
Alignment:
| Q |
91 |
attgactgagctgccttcaaatttttccaaactcatcaatttacgtcatcttga |
144 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||| | |||||||| ||||||||| |
|
|
| T |
5249381 |
attgactgagctcccttcagatttttacaaacttagcaatttacatcatcttga |
5249328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 8237 - 8552
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| | ||||||||||| |
|
|
| T |
8237 |
agacctttcatacactaagattagaagcttacctgataccatttgtatgttgtataatttacaaacactcttgttaaaaggttgtcgtcaattgactgag |
8336 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatcttgagatcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcaga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8337 |
ctcccttcaaatttttccaaactcatcaatttacgtcatcttgagctcccttgtataaagaaaatgccaaagaatatgggaaagctaaataatcttcaga |
8436 |
T |
|
| Q |
201 |
ccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttggg |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8437 |
ccatgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttggg |
8536 |
T |
|
| Q |
301 |
taatgtctgtgctcct |
316 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
8537 |
taatgtcagtgatcct |
8552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 2623648 - 2623807
Alignment:
| Q |
148 |
cccttgtataaa-gaaaatgccaaagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaa |
246 |
Q |
| |
|
|||||||||||| ||| ||| ||||| |||||||||||||||| |||||||| | | ||| ||||||||||| ||||| ||||||| ||||||||| || |
|
|
| T |
2623648 |
cccttgtataaaagaagatgtcaaagcatatgggaaagctaaacaatcttcaaagcatgttatattttattggggaagagcataatggatctgatcttaa |
2623747 |
T |
|
| Q |
247 |
agatttggcaaaactcaaccatcttcatggaacaattcatattaaagggttgggtaatgtc |
307 |
Q |
| |
|
||| |||||||||| |||||| |||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
2623748 |
agagttggcaaaacaaaaccat-ttcatggaacaattcatattgaaggcttggataatgtc |
2623807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 35141090 - 35141231
Alignment:
| Q |
1 |
agacctttcttacactcgtattaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttgagatgttgttatgaattgactgag |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||| || ||||| || | |||| | || || |||| |
|
|
| T |
35141090 |
agacctttcttacaccgagattacaagcttacctaattccatttgtatgttgtataatttgcatacgctcttactggaagaatgttttaaaccgattgag |
35141189 |
T |
|
| Q |
101 |
ctgccttcaaatttttccaaactcatcaatttacgtcatctt |
142 |
Q |
| |
|
|| || ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
35141190 |
ctcccatcaaattttcgcaaactcatcaatttatgtcatctt |
35141231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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