View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2168_low_11 (Length: 318)

Name: NF2168_low_11
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2168_low_11
NF2168_low_11
[»] chr1 (2 HSPs)
chr1 (33-301)||(28295859-28296131)
chr1 (55-301)||(28280265-28280508)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 33 - 301
Target Start/End: Complemental strand, 28296131 - 28295859
Alignment:
Q  33 taagaatatcatctcaatcatgatatggtatggaagtaattgatgagaatagtgtagagtacgattgatattatcatttgatgccacgtggaaggacggg 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28296131 taagaatatcatctcaatcatgatatggtatggaagtaattgatgagaatagtgtagagtacgagtgatattatcatttgatgccacgtggaaggacggg 28296032  T
Q  133 attgattgaaggaaggatgatgatgatga---gagtataggcaagtttaaatgcttaccattttccaatggcaaagagggaacatagagtcatgggatat 229  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28296031 attgattgaaggaaggatgatgatgatgatgagagtattggcaagtttaaatgcttaccattttccaatggcaaagagggaacatagagtcatgggatat 28295932  T
Q  230 gtttctgttgacctcaaagtcaaactactggatgcatatgtagcagacttttgtc-ttaaaaaacatttatac 301  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  28295931 gtttgtgttgacctcaaagtcaaactactggatgcatatgtagcaggcttttgtctttaaaaaatatttatac 28295859  T

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Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 55 - 301
Target Start/End: Original strand, 28280265 - 28280508
Alignment:
Q  55 atatggtatggaagtaattgatgagaatagtgtagagtacgattgatattatcatttgatgccacgtggaaggacgggattgattgaaggaaggatgatg 154  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  28280265 atatggtatggaagtaattgatgagaatagtatagagtacgagtgatattatcatttgatgccacgtggaaggacgggattgattgaaggaag---gatg 28280361  T
Q  155 atgatgagagtataggcaagtttaaatgcttaccattttccaatggcaaagagggaacatagagtcatgggatatgtttctgttgacctcaaagtcaaac 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  28280362 atgatgagagtattggcaagtttaaatgcttaccattttccaatggcaaagagggaacatagagtcatggg-tatgtttgtgttgacctcaaagtcaaac 28280460  T
Q  255 tactggatgcatatgtagcagacttttgtc-ttaaaaaacatttatac 301  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  28280461 tactggatgcatatgtagcaggcttttgtctttaaaaaatatttatac 28280508  T

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