View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_low_13 (Length: 284)
Name: NF2168_low_13
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_low_13 |
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| [»] scaffold0066 (2 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 32355 - 32267
Alignment:
| Q |
17 |
ctttgcagttttgccgactgttattgagattagtgttgagacactagatggttcacaagttatcctcaaggtatggacgatggtgaata |
105 |
Q |
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| T |
32355 |
ctttgcagttttgccgactgttattgagattagtgttgagacaccagatggttcacaagttatcctcaaggtatggacgatggtgaata |
32267 |
T |
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Target: scaffold0066; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 32196 - 32098
Alignment:
| Q |
176 |
aagataaacactccttagcgtttacttaagaagattctatttaccaatcatttaaatactcctaaagaatgaataagtgtattctttcaaatcttcata |
274 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
32196 |
aagataaacactccttagcgtttacttaagaagtttctatttaccaattatttaaatactcctaaagaatgaataagcgtattctaacaaatcttcata |
32098 |
T |
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