View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2168_low_15 (Length: 272)
Name: NF2168_low_15
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 36024509 - 36024769
Alignment:
| Q |
3 |
cattccgcctagcacaagatgtactaggacacacaacaaaaatagaacattgtcagaatacgaacaacaatactaaaatagacnnnnnnn-----ttaca |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36024509 |
cattccgcctagcacaagatgtactaggacacacaacaaaaatagaacattgtcagaatacgaacaacaatactaaaatagacaaaaaaaaaaaattaca |
36024608 |
T |
|
| Q |
98 |
agtcaatgcccaaacaaactagaggattaagctaacaattatgataacagaaagtaaattaacatannnnnnngccttcaaccaccaaaacgaaagaagc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36024609 |
agtcaatgcccaaacaaactagaggattaagctaacaattatgataaccgaaagtaaattaacat---gttttgccttcaaccaccaaaacgaaagaagc |
36024705 |
T |
|
| Q |
198 |
tttattttatctaacatttcatgcttccttgctgttaaatattctattgttacgttcttttcat |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36024706 |
tttattttatctaacatttcatgcttccttgctgttaaatattctattgttacattcttttcat |
36024769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 41325392 - 41325363
Alignment:
| Q |
232 |
ttaaatattctattgttacgttcttttcat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41325392 |
ttaaatattctattgttacgttcttttcat |
41325363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University