View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_low_17 (Length: 255)
Name: NF2168_low_17
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 6888349 - 6888105
Alignment:
| Q |
16 |
aaaagaaaatgaaagatagtcttctaattttggaacaaaactaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattg |
115 |
Q |
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| T |
6888349 |
aaaagaaaatgaaagatagtcttctaattttggaacaaaactaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattg |
6888250 |
T |
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| Q |
116 |
acatcatcttctgatatacacatcaaagtaacgtggaaattaatcactgtttcagaatttcaaatagtgaaagagagagaatgtaccgtgagtaaaaaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6888249 |
acatcatcttctgatatacacatcaaagtaacgtggaaattaatcactgtttcagaatttcaaatagtgaaagagagagaaagtaccgtgagtaaaaaat |
6888150 |
T |
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| Q |
216 |
tgttttaatttac-----actatcattctgcatggtccgtctttc |
255 |
Q |
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|||||||| |||| |||||||||||||||| |||||||||| |
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| T |
6888149 |
tgttttaaattacggattactatcattctgcatgatccgtctttc |
6888105 |
T |
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