View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_low_2 (Length: 480)
Name: NF2168_low_2
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 19402539 - 19402996
Alignment:
| Q |
17 |
atttctatggctctccagtacttcacaatttgcataaaaagtgttaacttcattatcagtaacatgatgaagattctgtacaacttcaacagctcttttg |
116 |
Q |
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| T |
19402539 |
atttctatggctctccagtacttcacaatttgcataaaaagtgttaacttcattatcagtaacatgatgaagattctgtacaacttcaacagctcttttg |
19402638 |
T |
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| Q |
117 |
tgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaacacaactgttatcacttatcacagagtttaaccaattgtatttatgtctt |
216 |
Q |
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| T |
19402639 |
tgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaacacaactgttatcacttatcacagagtttaaccaattgtatttacgtctt |
19402738 |
T |
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| Q |
217 |
tgaattatagtatctgctgttacagtgcattttgaattattgtaattggtttgtgttacagtgcattttcaaataatccttactttttaacatggtacat |
316 |
Q |
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| T |
19402739 |
tgaattatagtatctgctgttacagtgcattttgaattattgtaattggtttgtgttacagtgcattttcaaataatccttactttttaacatggtacat |
19402838 |
T |
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| Q |
317 |
ttggtgcatgaaataatcacagttttctcttcaagaattatgggaaatatttggcacactatacctcttcaagaattgaatgtcaaacgatagggccgtg |
416 |
Q |
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| T |
19402839 |
ttggtgcatgaaataatcacagttttctcttcaagaattatgggaaatatttggcacactatacctcttcaagaattgaatgtcaaacgatagggccgtg |
19402938 |
T |
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| Q |
417 |
cctacatgtttgacaacaagtattcgctatttctttttagtatgcacaggttctgctc |
474 |
Q |
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| T |
19402939 |
cctacatgtttgacaacaagtattcgcaatttctttttagtatgcactgattctgctc |
19402996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 19378082 - 19378135
Alignment:
| Q |
115 |
tgtgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaaca |
168 |
Q |
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| T |
19378082 |
tgtgttaaaatagaaaatttggtttcaaaataagaagtaaacatgcaaaaaaca |
19378135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 19458478 - 19458575
Alignment:
| Q |
116 |
gtgttaaaatagcaaatttggttctaaaataagaagtaaacatgcaaaaaacacaactgttatcacttatcacagagtttaaccaattgtatttatgtct |
215 |
Q |
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| T |
19458478 |
gtgttaaaatagaaaatttggtttcaatataagaagtaaatatgcaaaaaacagagctgt------tgataacagagtttaacaaattgtatttacgtct |
19458571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 19353276 - 19353307
Alignment:
| Q |
142 |
aaataagaagtaaacatgcaaaaaacacaact |
173 |
Q |
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| T |
19353276 |
aaataagaagtaaacatgcaaaaaacacaact |
19353307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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