View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2168_low_22 (Length: 232)

Name: NF2168_low_22
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2168_low_22
NF2168_low_22
[»] chr4 (14 HSPs)
chr4 (21-219)||(2625487-2625663)
chr4 (145-200)||(2367993-2368048)
chr4 (145-186)||(5106644-5106685)
chr4 (144-184)||(2391348-2391388)
chr4 (158-190)||(2621506-2621538)
chr4 (145-192)||(2363165-2363212)
chr4 (145-200)||(12124508-12124563)
chr4 (145-186)||(2490805-2490846)
chr4 (145-186)||(2518910-2518951)
chr4 (145-186)||(2533990-2534031)
chr4 (147-184)||(5035301-5035338)
chr4 (64-92)||(2391190-2391218)
chr4 (145-193)||(2460276-2460324)
chr4 (145-193)||(2471726-2471774)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 2625487 - 2625663
Alignment:
Q  21 ctcgatcttagcatcgtctccaaaagagttgacttctacacaattcttacccaaatctccactttccctttaaaaatcaaatcgttgattctttaccgaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||    
T  2625487 ctcgatcttagcatcgtctccaaaagagttgacttctacacaattcttacccaaatctccactttccctt----------------------ttaccgaa 2625564  T
Q  121 tgaatcttatgtgcaggactaaaatcttctttattgttgattgtttccctttactcgaagaactcaacctcacttatcccgattcggctatggcctttg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2625565 tgaatcttatgtgcaggactaaaatcttctttattgttgattgtttccctttactcgaagaactcaacctcacttatcccgattcggctatggtctttg 2625663  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 2367993 - 2368048
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactcaacctcacttatccc 200  Q
    ||||||| |||| |||||||||||||||||||||||||||| || ||| |||||||    
T  2367993 tcttcttcattgctgattgtttccctttactcgaagaactcgacatcagttatccc 2368048  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 5106644 - 5106685
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactca 186  Q
    ||||||| |||| |||||||||||||||||||||||||||||    
T  5106644 tcttcttcattgctgattgtttccctttactcgaagaactca 5106685  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 2391348 - 2391388
Alignment:
Q  144 atcttctttattgttgattgtttccctttactcgaagaact 184  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  2391348 atcttcttcattgttgattgcttccctttactcgaagaact 2391388  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 2621506 - 2621538
Alignment:
Q  158 tgattgtttccctttactcgaagaactcaacct 190  Q
    |||||||||||||||||||||||||||||||||    
T  2621506 tgattgtttccctttactcgaagaactcaacct 2621538  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 2363165 - 2363212
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactcaacctca 192  Q
    ||||||| |||| ||||||||||||||| ||||| |||||||||||||    
T  2363165 tcttcttcattgctgattgtttccctttcctcgacgaactcaacctca 2363212  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 12124563 - 12124508
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactcaacctcacttatccc 200  Q
    ||||||| |||| |||||||||||||||||| ||||||||  |||||| |||||||    
T  12124563 tcttcttcattgctgattgtttccctttactagaagaacttgacctcagttatccc 12124508  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 2490846 - 2490805
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactca 186  Q
    |||| ||||||| ||||||||||||||||||||| |||||||    
T  2490846 tcttttttattgctgattgtttccctttactcgacgaactca 2490805  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 2518951 - 2518910
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactca 186  Q
    ||||||| |||| ||||||||||||||||||| |||||||||    
T  2518951 tcttcttcattgctgattgtttccctttactcaaagaactca 2518910  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 2534031 - 2533990
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactca 186  Q
    ||||||| |||| |||||||||||||||||| ||||||||||    
T  2534031 tcttcttgattgctgattgtttccctttacttgaagaactca 2533990  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 5035338 - 5035301
Alignment:
Q  147 ttctttattgttgattgtttccctttactcgaagaact 184  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  5035338 ttcttgattgctgattgtttccctttactcgaagaact 5035301  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 2391190 - 2391218
Alignment:
Q  64 ttcttacccaaatctccactttcccttta 92  Q
    |||||||||||||||||||||||||||||    
T  2391190 ttcttacccaaatctccactttcccttta 2391218  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 2460324 - 2460276
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactcaacctcac 193  Q
    ||||||| |||| ||||||||| || |||||||||||||||| ||||||    
T  2460324 tcttcttaattgctgattgttttccattactcgaagaactcatcctcac 2460276  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 2471774 - 2471726
Alignment:
Q  145 tcttctttattgttgattgtttccctttactcgaagaactcaacctcac 193  Q
    ||||||| || | ||||||||| ||||||||||||||||||| ||||||    
T  2471774 tcttcttgatagctgattgttttcctttactcgaagaactcaccctcac 2471726  T

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