View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_low_23 (Length: 214)
Name: NF2168_low_23
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_low_23 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 53059377 - 53059164
Alignment:
| Q |
1 |
taagcgtcatacaagtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattcctgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53059377 |
taagcgtcatacaagtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattgctgc |
53059278 |
T |
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| Q |
101 |
aatgataagttgggttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgag |
200 |
Q |
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| T |
53059277 |
aatgataagtttggttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgag |
53059178 |
T |
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| Q |
201 |
taaacatgactgca |
214 |
Q |
| |
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|||||||||||||| |
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| T |
53059177 |
taaacatgactgca |
53059164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 53340762 - 53340969
Alignment:
| Q |
10 |
tacaagtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattcctgcaatgataag |
109 |
Q |
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|||||||||||||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
53340762 |
tacaagtgaatatgttggaagctaatttcatgtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatggctgcaataataag |
53340861 |
T |
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| Q |
110 |
ttgggttatttcgttgggttggt---atgcagcacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaaca |
206 |
Q |
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| T |
53340862 |
ttgggtgaaattgttgggttcgtccaatctaaaacaacatttgaggcggaatgatagtattggcagtgtgttgtcgcacgatagcaagactgagtaaata |
53340961 |
T |
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| Q |
207 |
tgactgca |
214 |
Q |
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|||||||| |
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| T |
53340962 |
tgactgca |
53340969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 53068594 - 53068475
Alignment:
| Q |
10 |
tacaagtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattcctgcaatgataag |
109 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| || | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53068594 |
tacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataag |
53068495 |
T |
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| Q |
110 |
ttgggttatttcgttgggtt |
129 |
Q |
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| T |
53068494 |
tttggtgatattgttgggtt |
53068475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 37418643 - 37418438
Alignment:
| Q |
1 |
taagcgtcatacaagtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattcctgc |
100 |
Q |
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|||||||| |||| |||||||| |||||||||||||||||||||||| || | | |||| | |||||||||||||||||| ||||||||||| |||| |
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| T |
37418643 |
taagcgtcctacaggtgaatattttggaagctaatttcatgtctaaaggataaaaatacatacttagttcaagggtttcagtttgtctttgtattgctgc |
37418544 |
T |
|
| Q |
101 |
aatgataagttgggttatttcgttgggttggt------atgcagcacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatg |
194 |
Q |
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||| |||||| | | | | |||||||| || || | |||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||| |
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| T |
37418543 |
aataataagtcgagcgacattgttgggttcgttgtatgataccacacaacatttgaggcggaatgatctgattggcagggtgttgtcacgtgatagcatg |
37418444 |
T |
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| Q |
195 |
attgag |
200 |
Q |
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| |||| |
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| T |
37418443 |
actgag |
37418438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 53068169 - 53068104
Alignment:
| Q |
140 |
acaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaac |
205 |
Q |
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| T |
53068169 |
acaacatttgaagcggaatgatcgtattggatgtgtgttgtcgcgcgatagcatgactgagtaaac |
53068104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 53062420 - 53062349
Alignment:
| Q |
147 |
ttgaagcggaatgatcgtattggcagtgtgttgtcac----gcgatagcatgattgagtaaacatgactgca |
214 |
Q |
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| T |
53062420 |
ttgaggcggaatgatcgtattggcagtgtattgtcgcgcgagcgatagcatgactgagtaaacatgactgca |
53062349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 31014069 - 31013874
Alignment:
| Q |
15 |
gtgaatatgttggaagctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattcctgcaatgataagttggg |
114 |
Q |
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|||||||| |||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| |
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| T |
31014069 |
gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcatctttgtattgctgcgataataagttggg |
31013970 |
T |
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| Q |
115 |
ttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaacatgac |
210 |
Q |
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| T |
31013969 |
ttataaccttgggtttgcatgcagcacaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgac |
31013874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 204
Target Start/End: Complemental strand, 6687493 - 6687350
Alignment:
| Q |
64 |
taagttcaagggtttcagttcgtctttgtattcctgcaatgataagttgggttatttcgttgggttggt---atgcagcacaacatttgaagcggaatga |
160 |
Q |
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||||||| |||||||||||| ||||||||||| | | |||||||||||| | || | ||| ||||||| || | || ||| ||||||||||||| |
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| T |
6687493 |
taagttctagggtttcagtttgtctttgtattgcggtgatgataagttggttgatatagttaggttggtcgtatttaagactacacatgaagcggaatga |
6687394 |
T |
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| Q |
161 |
tcgtattggcagtgtgttgtcacgcgatagcatgattgagtaaa |
204 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
6687393 |
tcgtattggcagattgttgtcacgcgatagcatgacggagtaaa |
6687350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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