View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2168_low_24 (Length: 208)
Name: NF2168_low_24
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 867171 - 866981
Alignment:
| Q |
1 |
catcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaaccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
867171 |
catcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaaccct |
867072 |
T |
|
| Q |
101 |
aaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaaccacatcatcatcctcct |
191 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
867071 |
aaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaacctcatcatcctcctcct |
866981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 1228448 - 1228258
Alignment:
| Q |
1 |
catcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaaccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1228448 |
catcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaaccct |
1228349 |
T |
|
| Q |
101 |
aaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaaccacatcatcatcctcct |
191 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
1228348 |
aaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattcccttcatcatcttcaacctcatcatcctcctcct |
1228258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University