View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2168_low_6 (Length: 424)

Name: NF2168_low_6
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2168_low_6
NF2168_low_6
[»] chr7 (6 HSPs)
chr7 (24-244)||(33249221-33249440)
chr7 (90-242)||(14238469-14238618)
chr7 (90-214)||(46290695-46290820)
chr7 (102-210)||(2836591-2836699)
chr7 (319-348)||(14238692-14238721)
chr7 (319-348)||(33249515-33249544)
[»] chr1 (2 HSPs)
chr1 (90-242)||(5041948-5042100)
chr1 (317-348)||(5042172-5042203)
[»] chr4 (3 HSPs)
chr4 (90-242)||(33572180-33572332)
chr4 (317-348)||(33572078-33572109)
chr4 (317-348)||(53841486-53841517)
[»] chr5 (2 HSPs)
chr5 (90-214)||(32658087-32658211)
chr5 (319-348)||(32657984-32658013)
[»] chr2 (1 HSPs)
chr2 (90-214)||(38376176-38376300)
[»] chr3 (2 HSPs)
chr3 (90-214)||(43147908-43148033)
chr3 (108-214)||(24929361-24929466)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 33249221 - 33249440
Alignment:
Q  24 acaacataggatttgataaaaatagtttaattaaatagtatgataatctcccttgtannnnnnnnnataaaacgattgtaatgcattgctttaattaact 123  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||         |||||||||||||||||||||||||||||||| |    
T  33249221 acaacataggatttgataaaaatagtttaattaaatagtgtgataatctcc-ttgtatttttttttataaaacgattgtaatgcattgctttaattaatt 33249319  T
Q  124 gaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaatttcatttcttaattaaattagaatnnnnnnnct 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  33249320 gaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaatttcatttcttaattaaattagaataaaaaaact 33249419  T
Q  224 gcattaatttatatatgaatc 244  Q
    |||||||||||||||||||||    
T  33249420 gcattaatttatatatgaatc 33249440  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 14238469 - 14238618
Alignment:
Q  90 ataaaacgattgtaatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaa 189  Q
    ||||||| ||||||||| |||| ||||||||| ||| ||||||||| |||||||||||||||||    ||||| || ||||||||||||| |||||||||    
T  14238469 ataaaactattgtaatgaattgatttaattaattgactacgttaaactattttaaacaattaat---caagtagtccaatttctgtgtaaaaataatcaa 14238565  T
Q  190 tttcatttcttaattaaattagaatnnnnnnnctgcattaatttatatatgaa 242  Q
    ||  |||| ||||||||||||||||       |||||||||||||||||||||    
T  14238566 ttcaattttttaattaaattagaataaaaaaactgcattaatttatatatgaa 14238618  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 46290820 - 46290695
Alignment:
Q  90 ataaaacgattgtaatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaa 189  Q
    ||||||| | ||||||| |||| ||||||||||||| || ||||||||||||| || |||||||||||||||||||||||| || ||||| |||||||||    
T  46290820 ataaaactagtgtaatgaattgatttaattaactgactatgttaaaatatttttaaaaattaattaaaaagtaatctaattcctttgtaaaaataatcaa 46290721  T
Q  190 tttca-tttcttaattaaattagaat 214  Q
    ||| | ||| ||||||||||||||||    
T  46290720 tttaatttttttaattaaattagaat 46290695  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 2836699 - 2836591
Alignment:
Q  102 taatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaatttcatttctta 201  Q
    ||||| |||| |||||||||| || || |||||||||||||||| |||||||||||||||||| ||||| || ||||| |||| ||||||| |||| |||    
T  2836699 taatgaattgatttaattaaccgactatgttaaaatattttaaagaattaattaaaaagtaatttaattactatgtaaaaatactcaatttaatttttta 2836600  T
Q  202 attaaatta 210  Q
    |||||||||    
T  2836599 attaaatta 2836591  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 14238692 - 14238721
Alignment:
Q  319 atattttagtcttttcaaaaattaaacaca 348  Q
    ||||||||||||||||||||||||||||||    
T  14238692 atattttagtcttttcaaaaattaaacaca 14238721  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 33249515 - 33249544
Alignment:
Q  319 atattttagtcttttcaaaaattaaacaca 348  Q
    ||||||||||||||||||||||||||||||    
T  33249515 atattttagtcttttcaaaaattaaacaca 33249544  T

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Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 5041948 - 5042100
Alignment:
Q  90 ataaaacgattgtaatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaa 189  Q
    ||||||| ||||||||| |||| ||||||||| ||| ||||||||| ||||||||||||||||| || ||||| |||||||||||||||| |||||||||    
T  5041948 ataaaactattgtaatgaattgatttaattaattgactacgttaaactattttaaacaattaatcaagaagtagtctaatttctgtgtaaaaataatcaa 5042047  T
Q  190 tttcatttcttaattaaattagaatnnnnnnnctgcattaatttatatatgaa 242  Q
    ||  |||||||||||||||||||||       |||||||||||||||||||||    
T  5042048 ttcaatttcttaattaaattagaataaaaaaactgcattaatttatatatgaa 5042100  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 5042172 - 5042203
Alignment:
Q  317 ggatattttagtcttttcaaaaattaaacaca 348  Q
    ||||||||||||||||||||||||||||||||    
T  5042172 ggatattttagtcttttcaaaaattaaacaca 5042203  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 242
Target Start/End: Complemental strand, 33572332 - 33572180
Alignment:
Q  90 ataaaacgattgtaatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaa 189  Q
    ||||||| ||||||||| |||| ||||||||| | | ||||||||||||||||||||||||||| || ||||| || ||||||||||||| |||||||||    
T  33572332 ataaaactattgtaatgaattgatttaattaatttactacgttaaaatattttaaacaattaatcaagaagtagtccaatttctgtgtaaaaataatcaa 33572233  T
Q  190 tttcatttcttaattaaattagaatnnnnnnnctgcattaatttatatatgaa 242  Q
    ||  |||||||||||||||||||||       |||||||||||||||||||||    
T  33572232 ttcaatttcttaattaaattagaataaaaaaactgcattaatttatatatgaa 33572180  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 33572109 - 33572078
Alignment:
Q  317 ggatattttagtcttttcaaaaattaaacaca 348  Q
    ||||||||||||||||||||||||||||||||    
T  33572109 ggatattttagtcttttcaaaaattaaacaca 33572078  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Original strand, 53841486 - 53841517
Alignment:
Q  317 ggatattttagtcttttcaaaaattaaacaca 348  Q
    ||||||||||||||||||||||||||||||||    
T  53841486 ggatattttagtcttttcaaaaattaaacaca 53841517  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 32658211 - 32658087
Alignment:
Q  90 ataaaacgattgtaatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaa 189  Q
    ||||||| ||||||||| |||| ||||||| | ||| ||||||||| ||||||||||||||||| || ||||| |||||||||||||||| |||||||||    
T  32658211 ataaaactattgtaatgaattggtttaattgattgactacgttaaactattttaaacaattaatcaagaagtagtctaatttctgtgtaaaaataatcaa 32658112  T
Q  190 tttcatttcttaattaaattagaat 214  Q
    ||  |||||||||||||||||||||    
T  32658111 ttcaatttcttaattaaattagaat 32658087  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 32658013 - 32657984
Alignment:
Q  319 atattttagtcttttcaaaaattaaacaca 348  Q
    ||||||||||||||||||||||||||||||    
T  32658013 atattttagtcttttcaaaaattaaacaca 32657984  T

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Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 38376176 - 38376300
Alignment:
Q  90 ataaaacgattgtaatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaa 189  Q
    ||||||| | ||||||| |||| |||||||||| || || ||||||||||||| || |||||||||||||||||||||||| || ||||| |||||||||    
T  38376176 ataaaactagtgtaatgaattgatttaattaaccgactatgttaaaatatttttaaaaattaattaaaaagtaatctaattcctttgtaaaaataatcaa 38376275  T
Q  190 tttcatttcttaattaaattagaat 214  Q
    ||| |||| ||||||||||||||||    
T  38376276 tttaattttttaattaaattagaat 38376300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 43148033 - 43147908
Alignment:
Q  90 ataaaacgattgtaatgcattgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaa 189  Q
    ||||||| | ||||||| |||| |||||||||| || || |||||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||    
T  43148033 ataaaactagtgtaatgaattgatttaattaaccgactatgttaaaatattttaaagaattaattaaaaagtaatctaattactgtataaaaataatcaa 43147934  T
Q  190 tttca-tttcttaattaaattagaat 214  Q
    ||| | ||| |||||||| |||||||    
T  43147933 tttaatttttttaattaagttagaat 43147908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 24929466 - 24929361
Alignment:
Q  108 attgctttaattaactgaatacgttaaaatattttaaacaattaattaaaaagtaatctaatttctgtgtaagaataatcaatttcatttcttaattaaa 207  Q
    |||| ||||||||| ||| || ||||||||||||| || || |||||||||| ||||||||||| ||||||| ||| |||||||  ||||||||||||||    
T  24929466 attgttttaattaattgacta-gttaaaatatttttaaaaactaattaaaaattaatctaatttttgtgtaaaaattatcaattcaatttcttaattaaa 24929368  T
Q  208 ttagaat 214  Q
    || ||||    
T  24929367 ttggaat 24929361  T

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