View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2168_low_7 (Length: 382)
Name: NF2168_low_7
Description: NF2168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2168_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 29010950 - 29010604
Alignment:
| Q |
16 |
gtaagtaatctccttttgaccatctgcttaaccttactcttcaaagtgacctctacacttcaaaaaatcttgatgcatggaagtaactttctgcagaaat |
115 |
Q |
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| T |
29010950 |
gtaagtaatctccttttgaccatctgcttaaccttactcttcaaagtgacctctacacttcaaaaaatcttgatgcatggaagtaactttctgcagaact |
29010851 |
T |
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| Q |
116 |
tgttggccactaatagaagtcattccttaaaattcttccaggtaccaatatcttgactgaatgtgggacgtgggttatgtcgggtacttaatggaaggaa |
215 |
Q |
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| T |
29010850 |
tgttggccactaatagaagtcattccttaaaattcttccaggtaccaatatcttgactgaatgtgggacgtgggttatgtcgggtacttaatggaaggaa |
29010751 |
T |
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| Q |
216 |
ttatccacacaatggatatgttgaagcctttcaagcactctactgttattgaagcacaaccacgttgttggtggtattcttactttcttagatcaccaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29010750 |
ttatccacacaatggatatgttgaagcctttcaagcactctactgttattgaagcacaaccacgttgttggtggtatt--------cttagatcaccaat |
29010659 |
T |
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| Q |
316 |
ttccattccaaattagatattgttgctgtggggtggcgtgtcaggttttcgcttc |
370 |
Q |
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| T |
29010658 |
ttccattccaaattagatattgttgctgtggggtggcgtgtcaggttttcgcttc |
29010604 |
T |
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