View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21690_high_1 (Length: 420)

Name: NF21690_high_1
Description: NF21690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21690_high_1
NF21690_high_1
[»] chr3 (2 HSPs)
chr3 (7-171)||(41740396-41740560)
chr3 (78-173)||(41741276-41741372)
[»] chr1 (3 HSPs)
chr1 (11-173)||(47510488-47510650)
chr1 (78-174)||(47512223-47512320)
chr1 (129-174)||(15911226-15911271)
[»] chr7 (6 HSPs)
chr7 (174-267)||(43367138-43367231)
chr7 (90-168)||(1271093-1271171)
chr7 (354-420)||(43366982-43367048)
chr7 (73-174)||(35380582-35380684)
chr7 (76-173)||(35105616-35105714)
chr7 (73-166)||(35379308-35379402)
[»] chr8 (1 HSPs)
chr8 (29-171)||(15883806-15883951)
[»] chr2 (2 HSPs)
chr2 (29-172)||(26026109-26026255)
chr2 (93-173)||(26030132-26030212)
[»] chr4 (3 HSPs)
chr4 (174-267)||(6200847-6200940)
chr4 (129-174)||(39095879-39095924)
chr4 (129-175)||(23176331-23176377)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 41740560 - 41740396
Alignment:
Q  7 tttggagttgtttcggtctttctttcagaagtaaggatttggaactacagacaaatataatttggagttattttgtattttaaatttccaccatttgatt 106  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  41740560 tttggagttgtttcagtctttctttcagaagtagggatttggaactagagacaaatgtaatttagagttcttttgtattttaaatttccaccatttgatt 41740461  T
Q  107 gatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccgatt 171  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41740460 gatccaatggctaggaatggatgaaggagagagatggagagaattttgaaggagaggatccgatt 41740396  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 41741276 - 41741372
Alignment:
Q  78 tttgtattttaa-atttccaccatttgattgatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccgattcc 173  Q
    ||||| |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41741276 tttgttttttaatatttccaccatttgattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatccgattcc 41741372  T

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Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 47510650 - 47510488
Alignment:
Q  11 gagttgtttcggtctttctttcagaagtaaggatttggaactacagacaaatataatttggagttattttgtattttaaatttccaccatttgattgatc 110  Q
    ||||||||||  ||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  47510650 gagttgtttcaatctttctttcagaagtagggatttggaactgcagacaaatgtaatttgaagttattttgtattttaaatttccaccatttgattgatc 47510551  T
Q  111 caatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccgattcc 173  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47510550 caatggctaggaatggatgaagcagagagatggagagaattctgaaggagaggatccgattcc 47510488  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 47512223 - 47512320
Alignment:
Q  78 tttgtattttaa-atttccaccatttgattgatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccgattcct 174  Q
    ||||| |||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47512223 tttgttttttaatatttccaccattttattgatccaatggctaggaatagatgaaggagagagatggagagaattctgaaggagaggatctgattcct 47512320  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 15911226 - 15911271
Alignment:
Q  129 gaaggagagagatggagagaattctgaaggagaggatccgattcct 174  Q
    |||||||||||| ||||| |||| ||||||||||||||| ||||||    
T  15911226 gaaggagagagaaggagacaattttgaaggagaggatccaattcct 15911271  T

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Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 43367231 - 43367138
Alignment:
Q  174 ttcttcatattcatcttcagaagctttgcatgagtggagaacttttgtgcaccgagaatgagaaatatgtgtttgctgattgtgaaagtgaagt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43367231 ttcttcatattcatcttcagaagctttgcatgagtggagaacttttgtgcaccgagaatgagaaatatgtgtttgctgattgtgaaagtgaagt 43367138  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 1271171 - 1271093
Alignment:
Q  90 atttccaccatttgattgatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccg 168  Q
    ||||||||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  1271171 atttccaccatttgattgatccagtggctaggaataaatgaaggagagagatggagagaattccgaaggagaggatccg 1271093  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 43367048 - 43366982
Alignment:
Q  354 ttagcagaagtcgttcatgctagaagaatgttactatcttttctatgattgattttgttacaccgtg 420  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  43367048 ttagcagaagtcgttcatactagaagaatgttactatcttttctatgattgattttgttgcaccgtg 43366982  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 35380582 - 35380684
Alignment:
Q  73 gttattttgtattttaa-atttccaccatttgattgatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccgatt 171  Q
    |||||||||| |||||| || || | ||| ||||||||||||||| ||| |||   ||||||| |||||| |||||||||||||||||||||||||||||    
T  35380582 gttattttgtcttttaatatatctatcatctgattgatccaatggctagaaattagtgaaggaaagagattgagagaattctgaaggagaggatccgatt 35380681  T
Q  172 cct 174  Q
    |||    
T  35380682 cct 35380684  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 35105714 - 35105616
Alignment:
Q  76 attttgtattttaa-atttccaccatttgattgatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccgattcc 173  Q
    |||||||||||||| || |||||| || |||||||| |||||||| || | || |||||||||||| ||||| | || | ||||||||||||| |||||    
T  35105714 attttgtattttaatatgtccaccgttagattgatctaatggttaagatttgaggaaggagagagaaggagacagttttaaaggagaggatccaattcc 35105616  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 35379402 - 35379308
Alignment:
Q  73 gttattttgtattttaa-atttccaccatttgattgatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatc 166  Q
    |||||||||| |||||| || |||||||| ||||||||| |||||  |  |||   ||||||||||||||||| |||||| ||||||||||||||    
T  35379402 gttattttgtcttttaatatatccaccatctgattgatctaatggccaaaaattagtgaaggagagagatggaaagaattttgaaggagaggatc 35379308  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 15883951 - 15883806
Alignment:
Q  29 tttcagaagtaagg-atttggaactacaga-caaatataatttggagttattttgtattttaa-atttccaccatttgattgatccaatggttaggaatg 125  Q
    |||||||||||||| ||||||||| ||| | ||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||  |  ||||    
T  15883951 tttcagaagtaagggatttggaaccacaaaacaaatgtaatttggagttattttgtcttttaatatttccaccatctgattgatccaatggcca-aaatg 15883853  T
Q  126 ga-tgaaggagagagatggagagaattctgaaggagaggatccgatt 171  Q
     | ||||||||||||||||||||||||||||||||||||||||||||    
T  15883852 tagtgaaggagagagatggagagaattctgaaggagaggatccgatt 15883806  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 26026255 - 26026109
Alignment:
Q  29 tttcagaagtaagg-atttggaactacaga-caaatataatttggagttattttgtattttaa-atttccaccatttgattgatccaatggttaggaatg 125  Q
    ||||| |||||||| ||||||||||||| | ||||| ||||||||||||||||| | |||||| || |||||||| |||||||||||||||  |  |||     
T  26026255 tttcataagtaagggatttggaactacataacaaatgtaatttggagttattttatcttttaatatatccaccatctgattgatccaatggccaaaaatt 26026156  T
Q  126 gatgaaggagagagatggagagaattctgaaggagaggatccgattc 172  Q
      |||||||||||||||||||||||||||||||||||||||||||||    
T  26026155 agtgaaggagagagatggagagaattctgaaggagaggatccgattc 26026109  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 26030132 - 26030212
Alignment:
Q  93 tccaccatttgattgatccaatggttaggaatggatgaaggagagagatggagagaattctgaaggagaggatccgattcc 173  Q
    |||||||| |||||||||||||||  || |||   ||||||||||||||||||| ||||||||||||||||||||||||||    
T  26030132 tccaccatctgattgatccaatggccagaaattagtgaaggagagagatggagataattctgaaggagaggatccgattcc 26030212  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 6200940 - 6200847
Alignment:
Q  174 ttcttcatattcatcttcagaagctttgcatgagtggagaacttttgtgcaccgagaatgagaaatatgtgtttgctgattgtgaaagtgaagt 267  Q
    ||||||||| || |||| ||||| ||||||||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||||||||||    
T  6200940 ttcttcatagtcgtcttaagaagttttgcatgagtggagaacttttgtgtaccgagaatggcaaatatgtgtttgttgattgtgaaagtgaagt 6200847  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 39095924 - 39095879
Alignment:
Q  129 gaaggagagagatggagagaattctgaaggagaggatccgattcct 174  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||||    
T  39095924 gaaggagagagaaggagacaattttgaaggagaggatccgattcct 39095879  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 23176377 - 23176331
Alignment:
Q  129 gaaggagagagatggagagaattctgaaggagaggatccgattcctt 175  Q
    |||||||||||| ||||| |||| |||||||||||||| ||||||||    
T  23176377 gaaggagagagaaggagacaattttgaaggagaggatctgattcctt 23176331  T

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