View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21690_high_6 (Length: 319)
Name: NF21690_high_6
Description: NF21690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21690_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 37969324 - 37969627
Alignment:
| Q |
13 |
cagagggacccacatttactattacccgctttgaggtaaaaaacgtcactaggccaccacattatgaaatttatttgaaggctaagaatccaaataaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969324 |
cagagggacccacatttactattacccgctttgaggtaaaaaacgttactaggccaccacattatgaaatttatttgaaggctaagaatccaaataaaag |
37969423 |
T |
|
| Q |
113 |
gttgggaatcgtttacgtaaattctgaggcttctatgcttttcgacgatactgtggtttctaaggggaaatttacaaagttgatggaacatggtgtagat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37969424 |
gttgggaatcgtttacgtaaattctgaggcttctatgcttttcgacgatactgtggttgctaaggggaaatttacaaagttgatggaacaaagtgtagat |
37969523 |
T |
|
| Q |
213 |
gcttcgacgcaatttaaggttgttgtaacaagaacgagcaaggcattgcccnnnnnnntggcaaagaagcccgtgaactttgaattggatatgaatcttg |
312 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37969524 |
gcttcgacacaatttaaggttgttgtaacaagaacgagcaaggcattgcccaaaaaaatggcaaagatgcccgtgaactttgaattggatatgaatcttg |
37969623 |
T |
|
| Q |
313 |
gtgt |
316 |
Q |
| |
|
|||| |
|
|
| T |
37969624 |
gtgt |
37969627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University