View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21691_high_16 (Length: 327)
Name: NF21691_high_16
Description: NF21691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21691_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 32 - 301
Target Start/End: Original strand, 32103251 - 32103519
Alignment:
| Q |
32 |
tcgtcttctaatgttcatcagtagagaattcttcactccttcagacacagcaggtaccaccttggtcaccgctttcccatcaggatcaacttccttgatt |
131 |
Q |
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| T |
32103251 |
tcgtcttctaatgttcatcagtagagaattcttcatttcttcagacacagaaggtaccaccttggtcaccgctttcccatcaggaccaacttccttgatt |
32103350 |
T |
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| Q |
132 |
tcacgcattagagggctcaaaactgtatcagaatcggccacagctattttgaacgcctgcatacaataaagttcatgatataggtttgtctggatagact |
231 |
Q |
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| T |
32103351 |
tcacgcattagagggctcaaaaccgtatcagaattggccacagctatcttgaacgcctgcatacaataaagttcgtgatataggtttgtctggatagact |
32103450 |
T |
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| Q |
232 |
catttatgtttatctaccagtataaacacttgtgatactgtttaggcgatcttttagaaaaagtttatga |
301 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32103451 |
ca-ttatgtttatctaccagtataaacacttgtgatactgtttaggcgatcttttagaaaaagtttatga |
32103519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 287
Target Start/End: Original strand, 32117373 - 32117637
Alignment:
| Q |
32 |
tcgtcttctaatgttcatcagtagagaattcttcactccttcagacacagcaggtaccaccttggtcaccgctttcccatcaggatcaacttccttgatt |
131 |
Q |
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|||||||||||| |||||||||||||| | ||||||| ||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||||||||| |
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| T |
32117373 |
tcgtcttctaatattcatcagtagagattccttcacttcttcagatacagcaggtaccaccttagtcacttcttgcccatcaggaccaacttccttgatt |
32117472 |
T |
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| Q |
132 |
tcacgcattagagggctcaaaactgtatcagaatcggccacagctattttgaacgcctgcatacaataaagttcatgat--ataggtttgtctggataga |
229 |
Q |
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| T |
32117473 |
tcacgcgtgagtgcgctcaaaaccgcatcaggatcagccaaaactcttttgaacgcctgtacacaataaagtctatgatgcaggggtctgtttggattga |
32117572 |
T |
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| Q |
230 |
ctcattt---at----gtttatctaccagtataaacacttgtgatactgtttaggcgatctttta |
287 |
Q |
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||||||| || ||||||||||||||||||||||| ||||| ||||| ||| ||||||||| |
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| T |
32117573 |
ctcatttgacatttgagtttatctaccagtataaacactagtgatcctgttcaggagatctttta |
32117637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 32109095 - 32109273
Alignment:
| Q |
32 |
tcgtcttctaatgttcatcagtagagaattcttcactccttcagacacagcaggtaccaccttggtcaccgctttcccatcaggatcaacttccttgatt |
131 |
Q |
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|||||||||||| || ||| ||||||| ||||| | ||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
32109095 |
tcgtcttctaatattattcaccagagaatccttcagttcttcagatacagcaggtaccaccttggtcacttcttgcccatcaggaccaacttccttgatc |
32109194 |
T |
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| Q |
132 |
tcacgcattagagggctcaaaactgtatcagaatcggccacagctattttgaacgcctgcatacaataaagttcatgat |
210 |
Q |
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|||||| | |||| ||||||||| |||||| ||| |||||| | |||||||| ||||||||||||||||||||||||| |
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| T |
32109195 |
tcacgcgtgagagtgctcaaaaccttatcaggatctgccacaacaattttgaatgcctgcatacaataaagttcatgat |
32109273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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