View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21691_high_19 (Length: 313)
Name: NF21691_high_19
Description: NF21691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21691_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 15525005 - 15525275
Alignment:
| Q |
20 |
catcatcacatccctcgtaagaggtatatcctccgattctagatcaagtacctgctgtagtgcttgacttaggtgttgtatccgcagattcaaatcaaca |
119 |
Q |
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| T |
15525005 |
catcatcacatccctcgtaagaggtatatcctccgtttctagatcaagtacctgctgtagtgcttgacttaggtgttgtatccgcagattcaaatcaaca |
15525104 |
T |
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| Q |
120 |
ataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaatagtttaaccattgtacttaaagcattgaatctagaataggataaacatacaa |
219 |
Q |
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| T |
15525105 |
ataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaacagtttaaccattgtacttaaagcattgaatctaaaataggataaacatacaa |
15525204 |
T |
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| Q |
220 |
tggaacat------tcataactgatatctggcacacaataatgaaacaaattagtaatgcgaggatacctc |
284 |
Q |
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| T |
15525205 |
tggaacattcataatcataactgatatctggcacacaataatgaaacaaattattaatgcgaggatacctc |
15525275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 15544628 - 15544778
Alignment:
| Q |
81 |
gcttgacttaggtgttgtatccgcagattcaaatcaacaataacatgctgcgagatgcaacaagcgtttgttcaattattcaagaatagtttaaccattg |
180 |
Q |
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| T |
15544628 |
gcttgacttaggcgtcgtgtccgctggctcaaatcatcaataacatgctgcaagatgcaacaagcttttgttcaattatttatgaacaatttaactatt- |
15544726 |
T |
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| Q |
181 |
tacttaaagcattgaatctagaataggataaacatacaatggaacattcataact |
235 |
Q |
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| T |
15544727 |
---ataaagcattgaaactataatagcataaacataaaatggaacattcaaaact |
15544778 |
T |
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