View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21691_high_2 (Length: 390)
Name: NF21691_high_2
Description: NF21691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21691_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 42063071 - 42063439
Alignment:
| Q |
1 |
actggcttagctttaggatctacagctttgacgctgcacctttgtccaagaaccatttcaactccccttcaggtgaaaccaatgcagcaggaagcttttc |
100 |
Q |
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| T |
42063071 |
actggcttagcttcaggatctacagctttgacgcagcacctttgtccaagaaccatttcaactccccttcaggtgaaaccaatgcagcaggaagcttttc |
42063170 |
T |
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| Q |
101 |
agatgtttcagatccgcgtagtgcagagtgaactgcatccgctttaccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaag |
200 |
Q |
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| T |
42063171 |
agatgtttcagatccgcgtagtgcagagtgaactgcatccgctttgccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaag |
42063270 |
T |
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| Q |
201 |
gtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtgacctgggaacagagaag |
300 |
Q |
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| T |
42063271 |
gtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtaacccattttttattctcatggacaagagggtgacctgggaacagagaag |
42063370 |
T |
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| Q |
301 |
ctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatgatg |
369 |
Q |
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| T |
42063371 |
ctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatgatg |
42063439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 366
Target Start/End: Original strand, 9514335 - 9514516
Alignment:
| Q |
185 |
attgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtga |
284 |
Q |
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| T |
9514335 |
attgatcactggaaaagtgaaagtaattctctctgatggtggttttggtgagtcagtgaggaaagtaacccatttctgatcctcttggagaagagcatga |
9514434 |
T |
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| Q |
285 |
cctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatg |
366 |
Q |
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|||||||| | ||| || ||||| ||||| |||||||| || || | |||||||||||||||||| |||||| ||| ||||| |
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| T |
9514435 |
cctgggaataaagatgcaacatgtccatccggacccatacctaggagcatgagatcaaattttggtaatccattggttgatg |
9514516 |
T |
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