View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21691_high_6 (Length: 357)

Name: NF21691_high_6
Description: NF21691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21691_high_6
NF21691_high_6
[»] chr4 (9 HSPs)
chr4 (21-313)||(25201454-25201744)
chr4 (23-225)||(13957478-13957681)
chr4 (31-307)||(51758625-51758901)
chr4 (23-225)||(42511386-42511586)
chr4 (23-188)||(10142410-10142576)
chr4 (23-105)||(14192065-14192147)
chr4 (23-199)||(51337817-51337997)
chr4 (23-157)||(28143196-28143333)
chr4 (64-307)||(20151992-20152236)
[»] chr7 (13 HSPs)
chr7 (23-307)||(39038311-39038593)
chr7 (23-307)||(43178647-43178928)
chr7 (23-179)||(24441706-24441864)
chr7 (23-157)||(6195668-6195805)
chr7 (23-199)||(6189152-6189332)
chr7 (23-105)||(19311691-19311773)
chr7 (23-199)||(48636868-48637048)
chr7 (23-105)||(8069846-8069928)
chr7 (40-249)||(23305442-23305648)
chr7 (40-99)||(8113566-8113625)
chr7 (89-225)||(8113640-8113778)
chr7 (23-199)||(48238625-48238804)
chr7 (115-188)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (23-307)||(11648157-11648440)
chr8 (23-307)||(960728-961012)
chr8 (71-177)||(35824166-35824273)
chr8 (23-127)||(602175-602280)
chr8 (23-181)||(11994463-11994623)
chr8 (107-225)||(9381946-9382062)
chr8 (93-175)||(32073462-32073545)
chr8 (23-105)||(2878957-2879039)
chr8 (115-282)||(24683070-24683231)
chr8 (23-105)||(6927306-6927388)
chr8 (23-105)||(28509524-28509606)
chr8 (23-105)||(28516731-28516813)
[»] chr6 (7 HSPs)
chr6 (41-307)||(1830840-1831104)
chr6 (23-225)||(11680517-11680720)
chr6 (29-189)||(14677914-14678076)
chr6 (23-105)||(33516375-33516457)
chr6 (23-189)||(4064985-4065150)
chr6 (64-179)||(14679000-14679116)
chr6 (31-84)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (29-307)||(5120580-5120860)
chr5 (23-225)||(43171066-43171267)
chr5 (143-305)||(23318168-23318329)
chr5 (36-189)||(26402144-26402295)
chr5 (23-189)||(14651489-14651656)
chr5 (23-199)||(7850480-7850660)
chr5 (228-307)||(33922247-33922326)
chr5 (23-105)||(38491310-38491392)
[»] chr1 (12 HSPs)
chr1 (143-307)||(12783770-12783933)
chr1 (72-289)||(47397224-47397437)
chr1 (29-177)||(12028035-12028183)
chr1 (40-177)||(5208454-5208592)
chr1 (23-141)||(48646236-48646355)
chr1 (23-199)||(36296868-36297048)
chr1 (23-199)||(42722403-42722583)
chr1 (23-157)||(28945560-28945697)
chr1 (23-105)||(26221954-26222036)
chr1 (36-106)||(49228403-49228473)
chr1 (36-141)||(35501355-35501460)
chr1 (107-154)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (31-225)||(47185206-47185401)
chr3 (23-105)||(6024505-6024587)
chr3 (23-199)||(23044645-23044825)
chr3 (23-157)||(31884705-31884842)
chr3 (106-159)||(44879476-44879529)
chr3 (23-99)||(44879802-44879878)
[»] chr2 (17 HSPs)
chr2 (23-225)||(25621679-25621882)
chr2 (134-307)||(6883442-6883607)
chr2 (40-225)||(14904265-14904451)
chr2 (195-303)||(25415782-25415890)
chr2 (36-307)||(38422322-38422594)
chr2 (23-189)||(90080-90248)
chr2 (76-244)||(43672737-43672906)
chr2 (23-105)||(2565866-2565948)
chr2 (23-105)||(18780924-18781006)
chr2 (23-157)||(19678245-19678382)
chr2 (23-105)||(6271355-6271437)
chr2 (23-199)||(29303342-29303522)
chr2 (23-105)||(45277251-45277333)
chr2 (203-307)||(10023316-10023418)
chr2 (23-105)||(7880108-7880190)
chr2 (40-109)||(25415498-25415567)
chr2 (23-86)||(6883603-6883666)
[»] scaffold0385 (1 HSPs)
scaffold0385 (26-142)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (136-225)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (23-101)||(2557-2635)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 25201744 - 25201454
Alignment:
Q  21 acatcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  25201744 acatcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatatttgatacaaaattagtgttag 25201645  T
Q  120 actttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatg 219  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25201644 actttttagagaaatcataaatgcaagaactcctttgtatgtaagaagtacatcattcctctctttatataccataagtatttctaacaagtccattatg 25201545  T
Q  220 atgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttttttgtc 313  Q
    |||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||    
T  25201544 atgataaaaaatcaatattagactgttgttaaaagtgtactttct---atgaattttagcacacttgataacttatatcaataatttttttgtc 25201454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 13957681 - 13957478
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 121  Q
    |||| ||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||| ||||||||| |||| ||||||     
T  13957681 atcaacacgtaattaactaaattttaaacttttggatgcaaaattcttcaatgttaaactcataacaatgataatacatgatacaaaattagtgttagag 13957582  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
    |||||||| ||||||||||| |||||| || ||||||| ||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||    
T  13957581 tttttagataaatcatagatacaagaagtcatttgtatactagaagtacatcattcctctttttatatgctataagtatctctaacaagttcattatgat 13957482  T
Q  222 gata 225  Q
    ||||    
T  13957481 gata 13957478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 31 - 307
Target Start/End: Complemental strand, 51758901 - 51758625
Alignment:
Q  31 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaa-ctcataacaacaataatacttgatacaaa-ttagagttagactttttag 128  Q
    |||| |||||||| ||||||||||| |||  |||| ||  |||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  51758901 gtaattaattaaaatttaaacttttggatggaaaagtcggcaatgttaaaactcataacaacaataatacatgatacaaaattagtgttagactttttag 51758802  T
Q  129 agaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaa 228  Q
    || ||||  |||| ||||||||||||||| |||| ||||||||||||||| || |||||||   |||||||| | ||||||||| |||| ||||||| ||    
T  51758801 agtaatctaagatacaagaactcctttgtttgcttgaagtacatcattccgctttttatatgatataagtatctttaacaagtttattacgatgatacaa 51758702  T
Q  229 aattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    ||||||| ||||||  | |||||| |||||| ||| ||| |||||||||||||||||||||||||| ||||| ||||||    
T  51758701 aattaatgttagac--tagttaaaggtgtaccttcaatggtgaattttagcacacttaataacttacatcaacaatttt 51758625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 42511386 - 42511586
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 121  Q
    |||| ||||||| ||| ||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||  |    
T  42511386 atcagcacgtaattaactaaattttaaactcttagatgcaaa-ttctccaatgttaaactcataacaacaataatacatgatacaaaattagtgtta--c 42511482  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
    ||||||||  |||||||||  ||||||||| ||||||| ||||||||||||||||||||| |||||||   | |||||| ||||||||||||||||| ||    
T  42511483 tttttagaagaatcatagacacaagaactcttttgtatactagaagtacatcattcctctttttatatgttagaagtatctctaacaagttcattataat 42511582  T
Q  222 gata 225  Q
    ||||    
T  42511583 gata 42511586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 10142576 - 10142410
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 121  Q
    |||| ||||||| ||| ||||||||||||||||  || ||||||||| |||||||||||| |||||||||||||||| |||||| ||||||| |||||||    
T  10142576 atcaacacgtaattaactaaattttaaacttttgaatgcaaaattctccaatgttaaactaataacaacaataatacatgatacaaaattagtgttagac 10142477  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttata 188  Q
    |||||| || |||||||||| || |||||||||||||| ||||| |||||| |||||||| ||||||    
T  10142476 tttttaaaggaatcatagatacatgaactcctttgtatactagatgtacatgattcctctttttata 10142410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 14192065 - 14192147
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14192065 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 14192147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 51337997 - 51337817
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  51337997 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 51337898  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  51337897 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 51337817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 28143196 - 28143333
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| |||||||  |||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  28143196 atcaacacgtaatcaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 28143295  T
Q  120 actttttagagaaatcatagatgcaagaactcctttgt 157  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  28143296 attttttagagtaatctaagatacaataactcatttgt 28143333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 307
Target Start/End: Original strand, 20151992 - 20152236
Alignment:
Q  64 aattcttcaatgttaaactcataacaacaataatacttgatacaaattaga-gttagactttttagagaaatcatagatgcaagaactcctttgtatgct 162  Q
    |||||| |||| |||||| ||||||||||| |||| ||||||||||    | |||| ||||||||||| ||| | | |||||||||||||||| || | |    
T  20151992 aattctccaatattaaacccataacaacaacaatagttgatacaaaaccaatgttaaactttttagaggaataaaaaatgcaagaactcctttataagtt 20152091  T
Q  163 agaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtacttt 262  Q
    | ||||| ||||||| ||| |||||||   | |||||| |||| |||||| ||| |||| ||| || || | | ||||| ||||||||| ||| |   |     
T  20152092 acaagtatatcattcatctttttatatgttacaagtatctctatcaagtttattttgattatataatatgagtgttagaatgttgttaatagtatgtctc 20152191  T
Q  263 ctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    | |||| |||||| |||||||||| | ||||||||||||| ||||    
T  20152192 caatgaggaatttaagcacacttactcacttatatcaatactttt 20152236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 39038311 - 39038593
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 121  Q
    |||| ||||||| |||||||||||||||||||| |||  |||  ||  ||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  39038311 atcaacacgtaattaattaaattttaaacttttggatggaaa--tcc-caatgttaaactcataacaacaataatacatgatacaaaattagtgttagac 39038407  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
    ||||||||| |||| || ||  || ||||||||||||||||||||||||||||||||||| |||||||   |||||||| ||||||||||| ||||||||    
T  39038408 tttttagaggaatcgtatatagaaaaactcctttgtatgctagaagtacatcattcctctttttatatgttataagtatctctaacaagtttattatgat 39038507  T
Q  222 gataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    |||| ||||| ||| || || ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39038508 gatacaaaatcaatgttggattgttgttaaaagtgtaccttcaatgatgaattttagcacacttaataatttatatcaataatttt 39038593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 43178647 - 43178928
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 121  Q
    |||| ||||||| |||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||   |||||| | ||||||| |||| |||||||    
T  43178647 atcaacacgtaattaattaaattttaaacttttggataaaaaaatctccaatgttaaactcataacaa---taatacat-atacaaaattagtgttagac 43178742  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
    ||||||||| ||||| | || |||||||||||||||||||||||||||||||||| |||| |||||||   |||||||| |||| ||| |||||||||||    
T  43178743 tttttagaggaatcacaaatacaagaactcctttgtatgctagaagtacatcatttctctttttatatgatataagtatctctaccaaattcattatgat 43178842  T
Q  222 gataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    |||| ||||| ||| ||||||| |||||||| |||||| ||| ||| | ||||||| |||||||||||||||||||||||| ||||    
T  43178843 gatacaaaatcaatgttagactattgttaaatgtgtaccttcaatggttaattttaacacacttaataacttatatcaatactttt 43178928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 24441706 - 24441864
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgtt-aaactcataacaacaataatacttgatacaaa-ttagagttaga 120  Q
    |||| ||||||| ||| |||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||  |||| |    
T  24441706 atcaacacgtaattaaataaattttaaacttttggatgcaaaattcttcaatgtttaaactcaaaacaacaataatacatgatacaaaattattgttaaa 24441805  T
Q  121 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcct 179  Q
    |||||||||| |||||||||  ||||||||||||||||| ||||||||| |||||||||    
T  24441806 ctttttagaggaatcatagacacaagaactcctttgtatactagaagtatatcattcct 24441864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 6195668 - 6195805
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| |||||||||||||||| ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  6195668 atcaacacgtaattaattaaattttaaacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 6195767  T
Q  120 actttttagagaaatcatagatgcaagaactcctttgt 157  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  6195768 attttttagagtaatctaagatacaataactcatttgt 6195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 6189152 - 6189332
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  6189152 atcaacacgtaattaattaaattttatacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 6189251  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  6189252 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 6189332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 19311691 - 19311773
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19311691 atcaacacgtaattaattaaattttagacattttgatacaaaattctccaatgttaaacccataacaacaataatacttgata 19311773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 48637048 - 48636868
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  48637048 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 48636949  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  48636948 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 48636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 8069928 - 8069846
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  8069928 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgata 8069846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 23305648 - 23305442
Alignment:
Q  40 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatactt--gata-caaattagagttagactttttagagaaatca 136  Q
    ||||||||| |||||| ||||||||||| | ||||||||||| |||||| ||||||||||||  ||||  |||| |  |||||||||||| ||| ||||     
T  23305648 taaattttagacttttggatacaaaattatccaatgttaaacccataactacaataatacttgcgatagaaaatcaaggttagacttttttgaggaatct 23305549  T
Q  137 tagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaata 236  Q
     |||| | ||||||| ||||||||||||||||| || |||||||| || |||| | | |||      || ||||||||||| |||| || ||||| |||     
T  23305548 aagatacgagaactcatttgtatgctagaagtagattattcctcttttaatatgctacaag------taccaagttcattacgatgttacaaaatcaatg 23305455  T
Q  237 ttagactgttgtt 249  Q
    |||||||||||||    
T  23305454 ttagactgttgtt 23305442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 8113566 - 8113625
Alignment:
Q  40 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatac 99  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  8113566 taaattttaaacttttggatgcaaaattctccaatgttaaactcataacaacaataatac 8113625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 8113640 - 8113778
Alignment:
Q  89 aacaataatacttgatacaaa-ttagagttagacttttt-agagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctcttta 186  Q
    ||||||||||| ||||||||| |||| |||||||||||| |||| |||||| ||| |||||  ||||||||||  |||||||||||||||| |   ||||    
T  8113640 aacaataatacatgatacaaaattagtgttagacttttttagaggaatcatcgatacaagagttcctttgtatagtagaagtacatcattcttactttta 8113739  T
Q  187 tataccataagtatttctaacaagttcattatgatgata 225  Q
    |||   |||  ||| ||||||||||||||||||||||||    
T  8113740 tatgttatagatatctctaacaagttcattatgatgata 8113778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 48238804 - 48238625
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || |||  |||||||||||| ||||||| ||| |||||||||||||||||||||||    ||||||| ||||     
T  48238804 atcaacacgtaattaattaaattttagacatttgaatacaaaattctccaatgtt-aacacataacaacaataatacttgataaacaaaattagtgttaa 48238706  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  48238705 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 48238625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 14574068 - 14573995
Alignment:
Q  115 gttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttata 188  Q
    ||||||||||| |||| ||||| ||| |||||||||||||| || | || ||||||||||||| ||| ||||||    
T  14574068 gttagacttttcagaggaatcaaagaggcaagaactcctttatacgttacaagtacatcattcttctttttata 14573995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 11648157 - 11648440
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagac 121  Q
    |||| ||| ||| |||||||||||||||||||| |||  ||||| || |||||||||||||||||||||||||| |  ||||||||| |||| ||| |||    
T  11648157 atcaacacataattaattaaattttaaacttttggatgaaaaatactccaatgttaaactcataacaacaataaca--tgatacaaaattagtgtttgac 11648254  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
    | ||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||| ||||||||||||||||| ||    
T  11648255 tctttagaggaatcatagatacaataactcctttgtatgctagaaatacatcattcctctttttataaactataagtatctctaacaagttcattataat 11648354  T
Q  222 gataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    |||| ||||||||| ||||||| |||||||| |||||  ||| ||| || |||| ||||||||||||||||||||| |||| ||||    
T  11648355 gatacaaaattaatgttagactattgttaaatgtgtaacttcaatggtgtatttaagcacacttaataacttatattaatagtttt 11648440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 960728 - 961012
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttaga- 120  Q
    |||| ||||||| |||||||| ||||||||||| ||| |||||||||  |||||||||||||| ||||||| ||||| || | | ||||||  ||||||     
T  960728 atcaacacgtaattaattaaaatttaaactttttgatgcaaaattctctaatgttaaactcatcacaacaagaatacatggtgcaaaattaatgttagat 960827  T
Q  121 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatga 220  Q
     ||||||||| |||||||||| ||||||||| ||||||||||| ||||  ||||||||||| |||||||   ||||  ||  ||||||||||||||||||    
T  960828 ttttttagaggaatcatagatacaagaactcatttgtatgctataagt--atcattcctctttttatatgttataaacatagctaacaagttcattatga 960925  T
Q  221 tgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    ||||| ||||||||| || || ||||||||||||||| | ||| ||| | |||||||||||||||||||||||||||||||||||||    
T  960926 tgatacaaaattaatgttggattgttgttaaaagtgtgccttcaatggtcaattttagcacacttaataacttatatcaataatttt 961012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 35824273 - 35824166
Alignment:
Q  71 caatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagta 169  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||| ||||||||||  ||||| |||||||||| | |||||||    
T  35824273 caatgttaaactcataacaacaataatacatgatacaaaattagtgttaaactttttagaggaatcatagataaaagaaatcctttgtataccagaagta 35824174  T
Q  170 catcattc 177  Q
    ||||||||    
T  35824173 catcattc 35824166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 602175 - 602280
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 121  Q
    |||| ||||||| |||||||||||||||||||| |||  ||||||||  |||||||||||||||||||||||||||| ||| || ||||||| |||||||    
T  602175 atcaacacgtaattaattaaattttaaacttttggatggaaaattctaaaatgttaaactcataacaacaataatacatgacacaaaattagtgttagac 602274  T
Q  122 ttttta 127  Q
    ||||||    
T  602275 ttttta 602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 11994463 - 11994623
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttaga 120  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  |  | |||| |    
T  11994463 atcaacacgtaattaattaaattttagacattttgatacaaaattctccaatgttaaacccataacaacaataatacttgataaaaaaaaatgtgttaaa 11994562  T
Q  121 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctct 181  Q
     ||||||||| ||||  |||| ||| ||||| ||||||| ||| || || |||||||||||    
T  11994563 atttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctct 11994623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 9381946 - 9382062
Alignment:
Q  107 aaattagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaa 206  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||| |||||||  |||||||||||||||| | | ||||||| | | | |||   ||||    
T  9381946 aaattagtgttagactttttagaggaatcatagatacaagaactcttttgtatattagaagtacatcattcttatttttatatgctacaggta--gctaa 9382043  T
Q  207 caagttcattatgatgata 225  Q
    |||||||||||||||||||    
T  9382044 caagttcattatgatgata 9382062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 32073545 - 32073462
Alignment:
Q  93 ataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcat 175  Q
    |||||||  |||||||| ||||||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||    
T  32073545 ataatacaagatacaaagttagagttagactttttagaggaatcatagatacaaaaactcatttgtatgctagaagtacatcat 32073462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 2878957 - 2879039
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  2878957 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatattaaactcataacaacaataatacttgata 2879039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 282
Target Start/End: Complemental strand, 24683231 - 24683070
Alignment:
Q  115 gttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttca 214  Q
    |||||||||||||||| ||||  |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||| | | ||       || |||||| |    
T  24683231 gttagactttttagagtaatctaagatacaagaactcatttgtatgctacaagtaaatcattcctctttttatatgctacaa------ataccaagttta 24683138  T
Q  215 ttatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcaca 282  Q
    ||||||| ||| ||||| ||| |||||||||||||||  |||||| | | ||| ||||||||||||||    
T  24683137 ttatgataatacaaaatcaatgttagactgttgttaactgtgtacctccaatggtgaattttagcaca 24683070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 6927306 - 6927388
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  6927306 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 6927388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 28509606 - 28509524
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  28509606 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 28509524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 28516813 - 28516731
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  28516813 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 28516731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 41 - 307
Target Start/End: Complemental strand, 1831104 - 1830840
Alignment:
Q  41 aaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatag 139  Q
    ||||||||||||||| |||  |||||||| |||||||||||| |||||||   |||||| ||||||||| ||||  ||||||||||||||| |||||       
T  1831104 aaattttaaacttttggatggaaaattctccaatgttaaacttataacaa---taatacatgatacaaaattagttttagactttttagagtaatcaata 1831008  T
Q  140 atgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatatta 239  Q
    || ||||| |||||||||||||||||||| |||||||| ||| |||||||   ||||||||||||| ||||||||||||||||||| ||||| ||| |||    
T  1831007 atacaagagctcctttgtatgctagaagtgcatcattcatctttttatatgttataagtatttctagcaagttcattatgatgatacaaaatcaatgtta 1830908  T
Q  240 gactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
     ||| |||||||| |||||||||| ||| | |||||||| ||||||||||||||||||||||||||||    
T  1830907 tactattgttaaatgtgtactttcaatggttaattttaggacacttaataacttatatcaataatttt 1830840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 11680517 - 11680720
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 121  Q
    |||| ||||||| ||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||  |||||||    
T  11680517 atcaacacgtaattaactaaattttaaagttttagatgcaaaattctccaatgttaaactcctaacaacaataatacttgatacaaaattattgttagac 11680616  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
    ||||| ||| |||| ||||   |  |||||| |  ||| |||||||||||||||| |||| ||||||| | |||||||| ||||||||||||||||||||    
T  11680617 ttttttgaggaatcttagacagagtaactccataatatactagaagtacatcattactctttttatatgctataagtatctctaacaagttcattatgat 11680716  T
Q  222 gata 225  Q
    ||||    
T  11680717 gata 11680720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 14678076 - 14677914
Alignment:
Q  29 acgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttagacttttt 126  Q
    |||||| ||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  |  | |||||| |||||    
T  14678076 acgtaattaattaaattttagacatttggatacaaaattctccaatgttaaacccataacaacaataatacttgataaaaaaaaatgtgttagaattttt 14677977  T
Q  127 agagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 189  Q
    |||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  14677976 agagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 14677914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 33516375 - 33516457
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  33516375 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 33516457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 4064985 - 4065150
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 121  Q
    |||| ||| ||| |||||||||||||  ||||| ||| || |||||| |||| |||||| |||| ||||||| ||||||||||| |||  || |||  ||    
T  4064985 atcaacacttaattaattaaattttagccttttggatgcataattctccaatattaaacccatagcaacaattatacttgatacaaaaccagcgtt--ac 4065082  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 189  Q
    ||||||||| || || |||| ||||||||||||| |||| || ||| ||||||||||||  |||||||    
T  4065083 tttttagaggaaccaaagatacaagaactcctttatatgttacaagaacatcattcctcattttatat 4065150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 14679000 - 14679116
Alignment:
Q  64 aattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagactttttagagaaatcatagatgcaagaactcctttgtatgct 162  Q
    ||||||||||| |||||| ||| | |||||||||||||||||| ||| ||| |||| | ||||||||  ||||| |||||||| | ||| ||| |||| |    
T  14679000 aattcttcaatattaaacgcatgataacaataatacttgatacaaaactagtgttaaattttttagaagaatcagagatgcaaaatctcatttatatgtt 14679099  T
Q  163 agaagtacatcattcct 179  Q
    | |||| ||||||||||    
T  14679100 acaagtgcatcattcct 14679116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 1831190 - 1831137
Alignment:
Q  31 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactca 84  Q
    |||| |||||| ||||||||||||| |||  |||||||| ||||||||||||||    
T  1831190 gtaattaattatattttaaacttttggatcgaaaattctccaatgttaaactca 1831137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 5120580 - 5120860
Alignment:
Q  29 acgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagacttttta 127  Q
    |||||| |||||||||||||||||||| |||  |||||||| ||||||||  || |||||||||||||||| ||||||||| |||| |||||| ||||||    
T  5120580 acgtaattaattaaattttaaacttttggatgaaaaattctccaatgtta--cttataacaacaataatacatgatacaaaattagtgttagagttttta 5120677  T
Q  128 gagaaatcatagatgcaagaact---cctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgat 224  Q
     || |||||||||| ||||||||   | ||||||||||||||||||| ||||||||| |||||||   |||||||| ||||||||||||||||| |||||    
T  5120678 aaggaatcatagatacaagaactgatcatttgtatgctagaagtacaccattcctctttttatatgatataagtatctctaacaagttcattataatgat 5120777  T
Q  225 aaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    | || || ||| ||| ||||||||||||||||||| ||| |   ||||||||||||||||| |||| ||||||||||||||||    
T  5120778 agaatatcaatgttaaactgttgttaaaagtgtaccttcaaatgtgaattttagcacacttgataatttatatcaataatttt 5120860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 43171066 - 43171267
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 121  Q
    |||| ||||||| ||| |||||||||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||| | |||| ||||||| |||||||    
T  43171066 atcaacacgtaattaactaaattttaaacttttggatgcaaaattctccaatgttaaactcgtaacaaaaataatacataatacaaaattagtgttagac 43171165  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
    ||| ||||| ||||||| || ||||||||||||||||  ||||||||||||||||||| | |||||||   ||| |||| ||||  ||||||||||||||    
T  43171166 tttgtagaggaatcataaatacaagaactcctttgtacactagaagtacatcattcctttttttatatgttataggtatctcta--aagttcattatgat 43171263  T
Q  222 gata 225  Q
    ||||    
T  43171264 gata 43171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 305
Target Start/End: Original strand, 23318168 - 23318329
Alignment:
Q  143 caagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagac 242  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||| ||| ||||| ||| |||       
T  23318168 caagaactcctt-gtatgttagaagtacatcattcctctttttatatactataagtatctttaacaagttcattatgattatacaaaatcaatgttatgt 23318266  T
Q  243 tgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatt 305  Q
    ||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||||||    
T  23318267 tgttgttaaaagtgtacattcaatggtgaaatttatcacacttaataacttatatcaataatt 23318329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 26402295 - 26402144
Alignment:
Q  36 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaa-attagagttagactttttagagaaat 134  Q
    |||||||||||||||||||| |||  |||||||| |||| ||||||||||   |  |||||||| |||||||| ||||| |||| |||||||||||||||    
T  26402295 taattaaattttaaacttttggatggaaaattctccaattttaaactcat---actaataatacatgatacaacattagtgttacactttttagagaaat 26402199  T
Q  135 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 189  Q
    ||||| | ||||||||||||||||| ||||||||| ||||||| ||| |||||||    
T  26402198 cataggtacaagaactcctttgtattctagaagtatatcattcttctttttatat 26402144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 14651489 - 14651656
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta-gagttagac 121  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| |||  | | |||| |     
T  14651489 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaatgtgttaaat 14651588  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 189  Q
    ||||||||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  14651589 tttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 14651656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 7850660 - 7850480
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  7850660 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 7850561  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  7850560 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 7850480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 33922247 - 33922326
Alignment:
Q  228 aaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    |||| ||| ||| |||||| |||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||    
T  33922247 aaatcaattttaaactgttattaaaagtgtaccttcaatgatgaattttagcacacttaatcacttatgtcaataatttt 33922326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 38491392 - 38491310
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38491392 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 38491310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 143 - 307
Target Start/End: Original strand, 12783770 - 12783933
Alignment:
Q  143 caagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagac 242  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  12783770 caagaactcctt-gtatcctagaagtacatcattcctctttttatatgctataagtatctctaacaagttcattatgatgatacaaaatcaatgttagac 12783868  T
Q  243 tgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  12783869 tgttgttaaaagtgtaccttcaatgatgaattttaacacacttaataacttttatcaataatttt 12783933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 72 - 289
Target Start/End: Original strand, 47397224 - 47397437
Alignment:
Q  72 aatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtac 170  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||  ||| ||||||||||| ||||||| || ||| ||||||||| ||||||||||| ||    
T  47397224 aatgttaaactcataacaacaaaaatacatgatacaaaattagttttacactttttagaggaatcataaatacaataactcctttatatgctagaaggac 47397323  T
Q  171 atcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatg 270  Q
    ||||||||||||||||||| | |||||||| |||||||||||||     |||||| ||||| ||| |||||| |||||||||||||||| ||| ||| |     
T  47397324 atcattcctctctttatatgctataagtatctctaacaagttca-----atgatacaaaatcaatgttagacggttgttaaaagtgtaccttcaatggta 47397418  T
Q  271 aattttagcacacttaata 289  Q
    |||||||||||||||||||    
T  47397419 aattttagcacacttaata 47397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 12028183 - 12028035
Alignment:
Q  29 acgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagacttttta 127  Q
    |||||| ||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||    
T  12028183 acgtaattaactaaattttaaacttttggatgcaaaattctccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagac-tttta 12028085  T
Q  128 gagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattc 177  Q
    ||| |||||||||| ||||||||||||||||| | |||| ||||||||||    
T  12028084 gaggaatcatagatacaagaactcctttgtatacaagaaatacatcattc 12028035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 5208454 - 5208592
Alignment:
Q  40 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcata 138  Q
    |||||||||||||||| ||| ||||||||| |||||||| || |||||||||| |||||  ||||||||| |||| ||||||||||||||||||||||||    
T  5208454 taaattttaaacttttggatgcaaaattctacaatgttagacccataacaacagtaatatatgatacaaaattagtgttagactttttagagaaatcata 5208553  T
Q  139 gatgcaagaactcctttgtatgctagaagtacatcattc 177  Q
    ||| ||||||||| || |||| |||||||| ||||||||    
T  5208554 gatacaagaactcattcgtatactagaagtgcatcattc 5208592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 48646355 - 48646236
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata-caaattagagttagac 121  Q
    |||| |||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||  ||||||| ||||||     
T  48646355 atcaacacgcaattaattaaattttaaacatttagatgcaaaattcttcaatgttaaactcataacaacaataatacatgatataaaattagtgttagaa 48646256  T
Q  122 tttttagagaaatcatagat 141  Q
    ||||||||| || |||||||    
T  48646255 tttttagaggaaccatagat 48646236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 36297048 - 36296868
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  36297048 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 36296949  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  36296948 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 36296868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 42722583 - 42722403
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  42722583 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 42722484  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  42722483 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 42722403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 28945560 - 28945697
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  28945560 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 28945659  T
Q  120 actttttagagaaatcatagatgcaagaactcctttgt 157  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  28945660 attttttagagtaatctaagatacaataactcatttgt 28945697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 26222036 - 26221954
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  26222036 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataaaaacaataatacttgata 26221954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 49228403 - 49228473
Alignment:
Q  36 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac 106  Q
    |||||| |||||||||||||   |  |||||||| ||||||||||||||||||||||||||||| ||||||    
T  49228403 taattacattttaaacttttgattgaaaaattctccaatgttaaactcataacaacaataatacgtgatac 49228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 35501355 - 35501460
Alignment:
Q  36 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaattagagttagactttttagagaaatc 135  Q
    |||||||||||||  |||||  |||||  ||||| ||||||||||| ||||||||  ||||||||||||| |||   | |||||||||||| ||||||||    
T  35501355 taattaaattttaggcttttgtatacatcattctccaatgttaaacccataacaattataatacttgataaaaaaatgtgttagactttttcgagaaatc 35501454  T
Q  136 atagat 141  Q
    | ||||    
T  35501455 aaagat 35501460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 12783628 - 12783675
Alignment:
Q  107 aaattagagttagactttttagagaaatcatagatgcaagaactcctt 154  Q
    ||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  12783628 aaattagtggtagactttttagaggaatcatagatacaagaactcctt 12783675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 47185401 - 47185206
Alignment:
Q  31 gtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttaga 129  Q
    |||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||    
T  47185401 gtaattaactaaattttaaacatttggatgcaaaattctccaatgttaaactcataacaacaataattcatgatacaaaattagtgttagactttttaga 47185302  T
Q  130 gaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 225  Q
    | |||||||||| ||||||||| ||||||   || |||||||||||| |||| ||||||| | |||||||| ||||||||||||||| ||||||||    
T  47185301 ggaatcatagatacaagaactcttttgtacattataagtacatcatttctctttttatatgctataagtatctctaacaagttcattgtgatgata 47185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 6024505 - 6024587
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6024505 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 6024587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 23044645 - 23044825
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  23044645 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 23044744  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  23044745 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 23044825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 31884705 - 31884842
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  31884705 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 31884804  T
Q  120 actttttagagaaatcatagatgcaagaactcctttgt 157  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  31884805 attttttagagtaatctaagatacaataactcatttgt 31884842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 44879529 - 44879476
Alignment:
Q  106 caaattagagttagactttttagagaaatcatagatgcaagaactcctttgtat 159  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||||||    
T  44879529 caaattagtgttagactttttagaggaatcatagatacaagaactcctttgtat 44879476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 44879878 - 44879802
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatac 99  Q
    |||| ||||||| ||| |||||||||| ||| ||||| | ||||||| |||| ||||||||||||||| ||||||||    
T  44879878 atcaacacgtaattaactaaattttaatcttctagatgccaaattctccaatattaaactcataacaataataatac 44879802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 25621882 - 25621679
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagac 121  Q
    |||| ||||||| || ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  25621882 atcaacacgtaattagttaaattttaaacttttggaagcaaaattctccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagac 25621783  T
Q  122 tttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgat 221  Q
     |||||||| ||||||| || ||| ||||| ||||||| || |||||||||||||||||| ||| |||   |||  ||| |||||||| |||||||| ||    
T  25621782 cttttagaggaatcataaatacaataactcatttgtatactggaagtacatcattcctctttttctatgatatacatatctctaacaacttcattataat 25621683  T
Q  222 gata 225  Q
    ||||    
T  25621682 gata 25621679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 307
Target Start/End: Complemental strand, 6883607 - 6883442
Alignment:
Q  134 tcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaatta 233  Q
    |||||||| ||||||||| ||||||| ||| ||||||||||||||||| ||||||| | | |||||| |||||||||||||||||||||||| ||||| |    
T  6883607 tcatagatacaagaactcatttgtatactaaaagtacatcattcctctttttatatgctacaagtatctctaacaagttcattatgatgatataaaatca 6883508  T
Q  234 atattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    || || ||| ||||||||||| |||   ||| |||     ||||||||||||||||| ||||||||||||||||    
T  6883507 atgttcgaccgttgttaaaagcgta---tctttga-----tttagcacacttaataatttatatcaataatttt 6883442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 14904451 - 14904265
Alignment:
Q  40 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa-ttagagttagactttttagagaaatcata 138  Q
    ||||||||||||||||  || ||||||| | ||||||||| ||| ||||||||||||||| ||||||||| |||  |||||| ||||||||  |||||||    
T  14904451 taaattttaaacttttgaatgcaaaattatccaatgttaacctcctaacaacaataatacatgatacaaaattattgttagattttttagaagaatcata 14904352  T
Q  139 gatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 225  Q
    ||  ||| ||||| ||| ||| ||| ||||| |||| |||||| |||||||   |||||||| ||||||||||||||||||||||||    
T  14904351 gaaacaataactcatttatatactataagtatatcactcctctttttatatgttataagtatctctaacaagttcattatgatgata 14904265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 303
Target Start/End: Original strand, 25415782 - 25415890
Alignment:
Q  195 aagtatttctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataactta 294  Q
    |||||| |||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||| | |||||||||||| |||||||| || |||    
T  25415782 aagtatctctaacaagttcattatgatgatacaaaatcaatgttagattgttgttaaaagtgtaccttcaaagatgaattttagtacacttaaaaattta 25415881  T
Q  295 tatcaataa 303  Q
    |||||||||    
T  25415882 tatcaataa 25415890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 307
Target Start/End: Original strand, 38422322 - 38422594
Alignment:
Q  36 taattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatt-agagttagactttttagagaaat 134  Q
    |||||||||||||  ||||| ||| || | |||| |||| | |||| |||||||| |||| |||||||||||||   || |||||||||||||||  |||    
T  38422322 taattaaattttagccttttggatgcagacttctccaatatcaaacccataacaataatattacttgatacaaaaccagtgttagactttttagaagaat 38422421  T
Q  135 catagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaa 234  Q
    || |||| | ||||||||||| |||| || ||||||||||||||||| ||||||| | | |||||| |||| |||||||||| |||||||| || || |     
T  38422422 caaagatactagaactcctttatatgttacaagtacatcattcctctttttatatgctacaagtatctctatcaagttcattgtgatgatacaatatcag 38422521  T
Q  235 tattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaataatttt 307  Q
    | |||||||  |||||| | ||| | | | |||  |||||| ||| || |||||  |||||||||||||||||    
T  38422522 tgttagactactgttaacattgtgcctcccatggggaatttaagcccatttaatcccttatatcaataatttt 38422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 90080 - 90248
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaatta--gagttaga 120  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| |||  |  | |||| |    
T  90080 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaaatgtgttaaa 90179  T
Q  121 ctttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatat 189  Q
     ||||||||| ||||  |||| ||| ||||| ||||||| ||| || || ||||||||||| |||||||    
T  90180 ttttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatat 90248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 43672737 - 43672906
Alignment:
Q  76 ttaaactcataacaacaataatacttgatacaaatt-agagttagactttttagagaaatcatagatgcaagaactcctttgtatgctagaagtacatca 174  Q
    |||||| ||||||| ||||||||||||||||||| | ||  ||||||||||||||| ||||| |||| |   ||||||||| |||| || ||||||||||    
T  43672737 ttaaacccataacatcaataatacttgatacaaaatcagtattagactttttagaggaatcaaagataccgtaactcctttatatgttacaagtacatca 43672836  T
Q  175 ttcctctctttatataccataagtatttctaacaagttcattatgatgataaaaaattaatattagactg 244  Q
    ||||||| ||||||| |   ||||||||||| ||| |||||| |||||||| || || ||| ||||||||    
T  43672837 ttcctctttttatatgctgcaagtatttctatcaaattcattgtgatgatacaatatcaatgttagactg 43672906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 2565948 - 2565866
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2565948 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 2565866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 18780924 - 18781006
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||| | ||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18780924 atcaacacgtcattaattaaattttagacatttggatacaaaattctccaatgttaaactcataacaacaataatacttgata 18781006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 19678382 - 19678245
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    ||||||| ||||     
T  19678382 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaattagtgttaa 19678283  T
Q  120 actttttagagaaatcatagatgcaagaactcctttgt 157  Q
    | ||||||||| ||||  |||| ||| ||||| |||||    
T  19678282 attttttagagtaatctaagatacaataactcatttgt 19678245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 6271355 - 6271437
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  6271355 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgata 6271437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 29303522 - 29303342
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata---caaattagagttag 119  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||  ||||| |||||||||||||||||||||||    ||||||| ||||     
T  29303522 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaattctaaacacataacaacaataatacttgataaacaaaattagtgttaa 29303423  T
Q  120 actttttagagaaatcatagatgcaagaactcctttg-tatgctagaagtacatcattcctctctttatataccataagta 199  Q
    | ||||||||| ||||  |||| ||| ||||| |||| ||| ||| || || ||||||| ||| ||||||| | |||||||    
T  29303422 attttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgctataagta 29303342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 45277251 - 45277333
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| ||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  45277251 atcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 45277333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 10023418 - 10023316
Alignment:
Q  203 ctaacaagttcattatgatgataaaaaattaatattagactgttgttaaaagtgtactttctatgatgaattttagcacacttaataacttatatcaata 302  Q
    ||||||||||||||||||||||| ||||| ||| ||||| || |||||||||||  | ||| |||  |||||||||||||||| ||||||  ||||||||    
T  10023418 ctaacaagttcattatgatgatacaaaatcaatgttagattgatgttaaaagtgcgcattcaatggagaattttagcacacttcataact--tatcaata 10023321  T
Q  303 atttt 307  Q
    |||||    
T  10023320 atttt 10023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 7880108 - 7880190
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgata 105  Q
    |||| ||||||| || |||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  7880108 atcaacacgtaattagttaaattttagacatttggatacaaaattctccaatgctaaacacacaacaacaataatacttgata 7880190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 25415498 - 25415567
Alignment:
Q  40 taaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatacaaa 109  Q
    ||||||||||| |||| |||  ||||||||  |||||||| ||||||||||||||||||| |||||||||    
T  25415498 taaattttaaagtttttgatggaaaattctctaatgttaagctcataacaacaataatacatgatacaaa 25415567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 6883666 - 6883603
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcata 86  Q
    |||| ||| ||| ||||||||||||||| |||| |||| |||||||| ||||||||||||||||    
T  6883666 atcaacacataattaattaaattttaaatttttggatagaaaattctccaatgttaaactcata 6883603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 1020 - 903
Alignment:
Q  26 atcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatacttgatac-aaattagagttagacttt 124  Q
    |||| |||| ||| ||||| ||||||| || ||| ||||||||  ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  1020 atcatgtaattaactaaatattaaactattggatgcaaaattcaccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagacttt 921  T
Q  125 ttagagaaatcatagatg 142  Q
    |||||| |||||||||||    
T  920 ttagaggaatcatagatg 903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 1015 - 1104
Alignment:
Q  136 atagatgcaagaactcctttgtatgctagaagtacatcattcctctctttatataccataagtatttctaacaagttcattatgatgata 225  Q
    |||||| ||||||||| ||||||| ||||||||||||| ||||||| ||||||| | |||| ||| ||||||||||||||||||||||||    
T  1015 atagatacaagaactcttttgtatactagaagtacatcgttcctctttttatatgctataattatctctaacaagttcattatgatgata 1104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 2557 - 2635
Alignment:
Q  23 atcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatactt 101  Q
    |||| ||| ||| ||||||||||||| || ||| ||||||||||| | ||||||||||| |||||||||||||||||||    
T  2557 atcaacacataattaattaaattttagacatttggatacaaaattatccaatgttaaacacataacaacaataatactt 2635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University