View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21691_high_9 (Length: 348)
Name: NF21691_high_9
Description: NF21691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21691_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 26286921 - 26287257
Alignment:
| Q |
7 |
tttggtgttaagaagcagttgtaggtgttgtgtcatccacttaatcacaatcggattgtgattgagtgaaattataattatattttgtaagtagattaca |
106 |
Q |
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| T |
26286921 |
tttggtgttaggaagcagttgtaggtgttgtgtcatccacttaatcacaaccggattgtgattgagtgaaattataattatgttttgtaagtagattaca |
26287020 |
T |
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| Q |
107 |
acttattcttttgtctttaaaattttagtatggttgattattattttctaattatgttattatcaattcatatgcagtttgaatcttttaaattagtcat |
206 |
Q |
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| T |
26287021 |
acttactcttttgtctttaaaattttagtatggttgattattattttctaattatgttattatcaattcatatgcagtttgaatctttttttttagtcac |
26287120 |
T |
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| Q |
207 |
atatgactcgtactacataacatagaccctccttattttagattaattttaaaatgacatttatgttggttgcttggttgtactgttatatctatctagt |
306 |
Q |
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| T |
26287121 |
atatgtctcgcactacataacatataccctccttatttaagattaattttaaaatgacatttatgttggttgcttggttgtactgttatctctatctagt |
26287220 |
T |
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| Q |
307 |
atgtttcataagtagttgtttgataatgtagtttaaa |
343 |
Q |
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| T |
26287221 |
atgtttcataattagttgtttgataatgtagtttaaa |
26287257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 17863988 - 17863840
Alignment:
| Q |
65 |
tgattgagtgaaattataattatattttgtaagtagattacaacttattcttttgtctttaaaattttagtatggttgattattattttctaattatgtt |
164 |
Q |
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| T |
17863988 |
tgattgagcaaaattataattatgtttagtaagtagattagaacttactcttatgtcttttaaattttggtatggttgattatta-----taattatgtt |
17863894 |
T |
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| Q |
165 |
attatcaattcatatgcagtttgaatcttttaaattagtcatatatgactcgta |
218 |
Q |
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| T |
17863893 |
ataatcaattcatatgcagtttgaatccttttatggagtcacatatgactcgta |
17863840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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