View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21692_high_1 (Length: 500)
Name: NF21692_high_1
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21692_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 41955767 - 41955278
Alignment:
| Q |
1 |
atattatcgtgagtaatggataggcttttatttatttggttttcttttgggttaaaaatgatgggagttaatatacccatgcatggtgaacctggctaat |
100 |
Q |
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| T |
41955767 |
atattatcgtgagtaatggataagcttttatttatttggttttcttttgggttaaaaatgatgggagttaatatacccatgcatggtgaacctggctaat |
41955668 |
T |
|
| Q |
101 |
aagacatacacaaataggggaaaggatgaatgagatgtgaaatagagtggggactattggatgggcgagaatatttttgtttctggttgagagcatgcat |
200 |
Q |
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| T |
41955667 |
aagacatacacaaataggggaaaggatgaatg-----tgaaatagagtggggactattggatgggcaagaatatttttgtttctggttgagagcatgcat |
41955573 |
T |
|
| Q |
201 |
cttcaagtaaagttcttaagtgtaaagtatattatttagcatttatataaatacttcgataatatacagaaattaatttgataactcgtgtatttctatt |
300 |
Q |
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| T |
41955572 |
cttcaagtaaagttcttaagtgtaaagtatattatgtagcatttatataaatacttcgataatatacagaaattaatttgataattcgtgtatttctatt |
41955473 |
T |
|
| Q |
301 |
tctacactataatgatgatttaagggtatgtatatttttccttaaaaaaagtaaatcatgcttgagggtcttgt---nnnnnnnnnnnnntcatgtttgg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
41955472 |
tctacactataatgatgatttaagggtatgtatatttttccttaaaaaaagtaaatcatgcttgaggatcttgtaaaaaataaaaaaaattcatgtttgg |
41955373 |
T |
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| Q |
398 |
gagtaatttcttgtatattaatattttttcatgtttaacattgaattaaatttttatattgggtttaacttattcttataaaatcggtctgtgatg |
493 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
41955372 |
gagtaatttcttgtatattaata-tttttcgtgtttaacattgaattaaatttttatattggatttaacttattcttataaaatcggtctgggatg |
41955278 |
T |
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