View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21692_high_12 (Length: 329)
Name: NF21692_high_12
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21692_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 32 - 303
Target Start/End: Original strand, 32103249 - 32103519
Alignment:
| Q |
32 |
attcgtcttctaatgttcatcagtagagaattcttcacttcttcagacacagcaggtaccaccttggtcaccgctttcccatcaggatcaacttccttga |
131 |
Q |
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| T |
32103249 |
attcgtcttctaatgttcatcagtagagaattcttcatttcttcagacacagaaggtaccaccttggtcaccgctttcccatcaggaccaacttccttga |
32103348 |
T |
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| Q |
132 |
tttcacgcattagagggctcaaaactgtatcagaatcggccacagctattttgaacgcctgcatacaataaagttcatgatataggtttgtctggataga |
231 |
Q |
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| T |
32103349 |
tttcacgcattagagggctcaaaaccgtatcagaattggccacagctatcttgaacgcctgcatacaataaagttcgtgatataggtttgtctggataga |
32103448 |
T |
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| Q |
232 |
ctcatttatgtttatctaccagtataaacacttgtgatactgtttaggcgatcttttagaaaaagtttatga |
303 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32103449 |
ctca-ttatgtttatctaccagtataaacacttgtgatactgtttaggcgatcttttagaaaaagtttatga |
32103519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 32 - 289
Target Start/End: Original strand, 32117371 - 32117637
Alignment:
| Q |
32 |
attcgtcttctaatgttcatcagtagagaattcttcacttcttcagacacagcaggtaccaccttggtcaccgctttcccatcaggatcaacttccttga |
131 |
Q |
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| T |
32117371 |
attcgtcttctaatattcatcagtagagattccttcacttcttcagatacagcaggtaccaccttagtcacttcttgcccatcaggaccaacttccttga |
32117470 |
T |
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| Q |
132 |
tttcacgcattagagggctcaaaactgtatcagaatcggccacagctattttgaacgcctgcatacaataaagttcatgat--ataggtttgtctggata |
229 |
Q |
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| T |
32117471 |
tttcacgcgtgagtgcgctcaaaaccgcatcaggatcagccaaaactcttttgaacgcctgtacacaataaagtctatgatgcaggggtctgtttggatt |
32117570 |
T |
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| Q |
230 |
gactcattt---at----gtttatctaccagtataaacacttgtgatactgtttaggcgatctttta |
289 |
Q |
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||||||||| || ||||||||||||||||||||||| ||||| ||||| ||| ||||||||| |
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| T |
32117571 |
gactcatttgacatttgagtttatctaccagtataaacactagtgatcctgttcaggagatctttta |
32117637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 32109093 - 32109273
Alignment:
| Q |
32 |
attcgtcttctaatgttcatcagtagagaattcttcacttcttcagacacagcaggtaccaccttggtcaccgctttcccatcaggatcaacttccttga |
131 |
Q |
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|||||||||||||| || ||| ||||||| ||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
32109093 |
attcgtcttctaatattattcaccagagaatccttcagttcttcagatacagcaggtaccaccttggtcacttcttgcccatcaggaccaacttccttga |
32109192 |
T |
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| Q |
132 |
tttcacgcattagagggctcaaaactgtatcagaatcggccacagctattttgaacgcctgcatacaataaagttcatgat |
212 |
Q |
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| T |
32109193 |
tctcacgcgtgagagtgctcaaaaccttatcaggatctgccacaacaattttgaatgcctgcatacaataaagttcatgat |
32109273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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