View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21692_high_18 (Length: 321)

Name: NF21692_high_18
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21692_high_18
NF21692_high_18
[»] scaffold0116 (2 HSPs)
scaffold0116 (1-311)||(43700-44010)
scaffold0116 (94-311)||(47620-47837)
[»] chr6 (17 HSPs)
chr6 (1-311)||(25956537-25956847)
chr6 (3-311)||(27851065-27851373)
chr6 (133-311)||(20734128-20734304)
chr6 (1-161)||(19399766-19399928)
chr6 (2-131)||(31630622-31630752)
chr6 (152-289)||(22420981-22421117)
chr6 (1-103)||(18927832-18927934)
chr6 (152-298)||(2201133-2201277)
chr6 (7-103)||(28708636-28708732)
chr6 (202-308)||(34296953-34297059)
chr6 (1-132)||(34296980-34297113)
chr6 (1-94)||(18708656-18708749)
chr6 (220-269)||(18927904-18927953)
chr6 (1-94)||(23151069-23151162)
chr6 (220-269)||(19399838-19399888)
chr6 (12-94)||(27322221-27322303)
chr6 (25-132)||(20734158-20734267)
[»] chr4 (22 HSPs)
chr4 (2-311)||(13844435-13844744)
chr4 (1-311)||(46642729-46643038)
chr4 (1-161)||(15868765-15868925)
chr4 (1-131)||(362141-362272)
chr4 (1-233)||(15099243-15099464)
chr4 (17-134)||(52873249-52873367)
chr4 (1-161)||(630830-630990)
chr4 (133-311)||(33186097-33186273)
chr4 (1-161)||(32851281-32851439)
chr4 (1-103)||(9923305-9923407)
chr4 (90-161)||(22634269-22634339)
chr4 (90-161)||(13812865-13812936)
chr4 (101-161)||(20157349-20157409)
chr4 (1-103)||(11479452-11479554)
chr4 (1-103)||(35812231-35812333)
chr4 (185-263)||(15880744-15880821)
chr4 (220-269)||(9923377-9923426)
chr4 (220-269)||(11479433-11479482)
chr4 (233-311)||(14185253-14185331)
chr4 (220-311)||(35812171-35812261)
chr4 (1-94)||(19609480-19609573)
chr4 (25-132)||(33186134-33186243)
[»] chr1 (12 HSPs)
chr1 (1-311)||(28194365-28194675)
chr1 (2-311)||(43697269-43697578)
chr1 (1-134)||(43543005-43543139)
chr1 (1-201)||(35981723-35981914)
chr1 (5-206)||(20636747-20636939)
chr1 (5-131)||(46382652-46382777)
chr1 (122-206)||(49261346-49261430)
chr1 (133-289)||(51274290-51274445)
chr1 (185-309)||(12328538-12328660)
chr1 (202-298)||(8885459-8885555)
chr1 (2-103)||(48301020-48301121)
chr1 (67-132)||(51274299-51274366)
[»] chr5 (19 HSPs)
chr5 (1-311)||(5889092-5889401)
chr5 (1-149)||(29915150-29915299)
chr5 (133-311)||(12122202-12122378)
chr5 (3-206)||(21741563-21741757)
chr5 (14-161)||(21871627-21871774)
chr5 (14-161)||(21875907-21876054)
chr5 (133-311)||(21555060-21555236)
chr5 (133-311)||(21557726-21557902)
chr5 (134-309)||(31455686-31455862)
chr5 (133-311)||(30615751-30615926)
chr5 (134-309)||(31455073-31455249)
chr5 (152-298)||(24212382-24212526)
chr5 (138-311)||(36460170-36460341)
chr5 (203-298)||(35852686-35852781)
chr5 (90-145)||(24767409-24767463)
chr5 (133-206)||(17875209-17875282)
chr5 (1-132)||(36460178-36460311)
chr5 (45-132)||(12122232-12122321)
chr5 (25-132)||(24212400-24212509)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-235)||(85143-85376)
[»] chr3 (30 HSPs)
chr3 (1-218)||(18439857-18440073)
chr3 (1-176)||(20630147-20630323)
chr3 (1-311)||(12269465-12269773)
chr3 (1-161)||(49969934-49970096)
chr3 (133-311)||(31224635-31224811)
chr3 (133-311)||(15447681-15447854)
chr3 (133-269)||(31415399-31415534)
chr3 (2-206)||(1465441-1465636)
chr3 (1-145)||(12852440-12852585)
chr3 (220-311)||(1988912-1989004)
chr3 (1-145)||(23413322-23413464)
chr3 (90-161)||(14665600-14665670)
chr3 (127-206)||(49389661-49389740)
chr3 (202-311)||(11912983-11913092)
chr3 (1-79)||(49389818-49389896)
chr3 (7-103)||(5841943-5842039)
chr3 (1-161)||(14501029-14501187)
chr3 (185-289)||(6808184-6808287)
chr3 (1-143)||(45797074-45797213)
chr3 (1-103)||(40811994-40812096)
chr3 (1-132)||(11912929-11913062)
chr3 (1-94)||(17538263-17538356)
chr3 (1-94)||(40807152-40807245)
chr3 (90-161)||(14668756-14668825)
chr3 (1-104)||(30175307-30175410)
chr3 (1-94)||(22307386-22307479)
chr3 (25-123)||(31415436-31415535)
chr3 (18-100)||(1988977-1989059)
chr3 (204-302)||(49389740-49389840)
chr3 (220-269)||(49969974-49970024)
[»] chr7 (29 HSPs)
chr7 (1-235)||(17232516-17232749)
chr7 (1-235)||(8468322-8468548)
chr7 (1-134)||(14270136-14270270)
chr7 (1-131)||(45847735-45847866)
chr7 (1-207)||(9389726-9389923)
chr7 (171-311)||(15439318-15439457)
chr7 (133-311)||(30820937-30821113)
chr7 (133-308)||(36685934-36686107)
chr7 (133-269)||(38480232-38480367)
chr7 (152-311)||(11092751-11092908)
chr7 (1-100)||(37727672-37727771)
chr7 (152-311)||(11085013-11085170)
chr7 (1-145)||(18302063-18302207)
chr7 (152-298)||(9320423-9320567)
chr7 (220-311)||(37727607-37727699)
chr7 (185-310)||(15213746-15213869)
chr7 (1-94)||(12371434-12371527)
chr7 (1-132)||(15213707-15213840)
chr7 (90-145)||(9751619-9751673)
chr7 (17-103)||(11391920-11392006)
chr7 (1-94)||(13148275-13148368)
chr7 (101-161)||(2832331-2832391)
chr7 (1-103)||(8851959-8852061)
chr7 (90-145)||(39267762-39267817)
chr7 (25-123)||(36685971-36686070)
chr7 (25-123)||(38480269-38480368)
chr7 (1-94)||(11066624-11066717)
chr7 (25-132)||(11085031-11085140)
chr7 (45-132)||(11092789-11092878)
[»] scaffold0810 (2 HSPs)
scaffold0810 (1-123)||(2940-3062)
scaffold0810 (251-311)||(3076-3136)
[»] chr8 (18 HSPs)
chr8 (1-131)||(27472391-27472522)
chr8 (1-134)||(1327117-1327251)
chr8 (136-295)||(39833869-39834029)
chr8 (133-311)||(21579887-21580063)
chr8 (1-131)||(38550086-38550217)
chr8 (133-311)||(29763549-29763724)
chr8 (133-269)||(41680844-41680979)
chr8 (1-100)||(20982752-20982851)
chr8 (1-103)||(18760543-18760645)
chr8 (185-311)||(42560208-42560332)
chr8 (152-269)||(32807279-32807395)
chr8 (1-132)||(42560238-42560371)
chr8 (133-196)||(22965744-22965807)
chr8 (25-132)||(29763579-29763687)
chr8 (1-94)||(39936813-39936906)
chr8 (220-311)||(18760615-18760706)
chr8 (234-311)||(3273234-3273310)
chr8 (25-132)||(21579917-21580026)
[»] chr2 (13 HSPs)
chr2 (133-310)||(24865452-24865627)
chr2 (133-310)||(7672240-7672409)
chr2 (133-298)||(22500984-22501147)
chr2 (133-298)||(22508918-22509081)
chr2 (1-103)||(6576382-6576484)
chr2 (2-104)||(24883610-24883712)
chr2 (202-311)||(2524410-2524519)
chr2 (216-269)||(24436267-24436320)
chr2 (67-132)||(24865481-24865548)
chr2 (1-79)||(5032142-5032220)
chr2 (220-309)||(6576454-6576543)
chr2 (1-103)||(24436200-24436301)
chr2 (2-79)||(24781658-24781735)
[»] scaffold0075 (1 HSPs)
scaffold0075 (1-161)||(8350-8510)
[»] scaffold0737 (2 HSPs)
scaffold0737 (133-311)||(6359-6535)
scaffold0737 (25-132)||(6389-6498)
[»] scaffold0071 (1 HSPs)
scaffold0071 (133-311)||(14335-14511)
[»] scaffold1351 (1 HSPs)
scaffold1351 (133-310)||(1561-1736)
[»] scaffold0513 (1 HSPs)
scaffold0513 (4-134)||(10961-11092)
[»] scaffold1137 (1 HSPs)
scaffold1137 (1-201)||(2327-2518)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-133)||(362900-363033)
[»] scaffold0124 (1 HSPs)
scaffold0124 (1-145)||(24726-24870)
[»] scaffold0100 (1 HSPs)
scaffold0100 (14-134)||(36140-36261)
[»] scaffold0815 (1 HSPs)
scaffold0815 (133-263)||(479-608)
[»] scaffold0395 (1 HSPs)
scaffold0395 (133-298)||(10890-11053)
[»] scaffold0261 (1 HSPs)
scaffold0261 (7-161)||(18393-18546)
[»] scaffold0599 (4 HSPs)
scaffold0599 (202-311)||(4677-4786)
scaffold0599 (202-311)||(259-368)
scaffold0599 (1-132)||(205-338)
scaffold0599 (1-132)||(4623-4756)
[»] scaffold0142 (1 HSPs)
scaffold0142 (1-145)||(7720-7865)
[»] scaffold0080 (2 HSPs)
scaffold0080 (1-103)||(59347-59449)
scaffold0080 (204-303)||(59295-59393)
[»] scaffold0235 (1 HSPs)
scaffold0235 (1-161)||(13469-13627)
[»] scaffold0221 (1 HSPs)
scaffold0221 (101-161)||(12864-12924)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-103)||(76898-77000)
[»] scaffold0679 (1 HSPs)
scaffold0679 (7-103)||(2471-2567)
[»] scaffold0434 (1 HSPs)
scaffold0434 (3-132)||(6770-6901)
[»] scaffold0166 (1 HSPs)
scaffold0166 (90-145)||(9906-9960)
[»] scaffold0371 (2 HSPs)
scaffold0371 (2-103)||(3073-3174)
scaffold0371 (220-311)||(3144-3234)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-94)||(10029-10122)
[»] scaffold0375 (1 HSPs)
scaffold0375 (2-93)||(9106-9197)
[»] scaffold0061 (2 HSPs)
scaffold0061 (204-298)||(15421-15515)
scaffold0061 (204-298)||(24479-24573)
[»] scaffold1052 (1 HSPs)
scaffold1052 (90-140)||(3104-3153)
[»] scaffold0802 (2 HSPs)
scaffold0802 (1-103)||(5498-5600)
scaffold0802 (220-269)||(5479-5528)
[»] scaffold0335 (2 HSPs)
scaffold0335 (1-99)||(813-911)
scaffold0335 (220-269)||(885-934)
[»] scaffold0192 (1 HSPs)
scaffold0192 (88-145)||(9851-9908)
[»] scaffold0384 (1 HSPs)
scaffold0384 (1-94)||(8189-8282)
[»] scaffold0509 (1 HSPs)
scaffold0509 (10-94)||(9561-9645)


Alignment Details
Target: scaffold0116 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 44010 - 43700
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||||||||||| |||||| |||||||| |||||| |||||||||||||| | |||||||||||||  |||||||||||||||||||    
T  44010 gcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttcacaatatata 43911  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  43910 aatattctcacattaatcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttc 43811  T
Q  200 atatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
      ||||||||||||||||| | || |||||||||||||||| |||||| || ||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  43810 --atatataacatttgcaactccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 43713  T
Q  299 gtcatcctctctg 311  Q
     ||||||||||||    
T  43712 atcatcctctctg 43700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 47837 - 47620
Alignment:
Q  94 atatataaataatctcacattaatcatcaa-gtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataat 192  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  47837 atatataaatattctcacattaatcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccatcaataat 47738  T
Q  193 aatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaat 291  Q
    ||||||||||  |||||||||||||| | || |||||||||||||||| |||||| || ||||||||||||| ||||| ||||||| |||||||||||||    
T  47737 aatcttcata--tataacatttgcaactacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaat 47640  T
Q  292 catcttagtcatcctctctg 311  Q
    ||||||| ||||||||||||    
T  47639 catcttaatcatcctctctg 47620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 25956847 - 25956537
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||||||||||| |||||| |||||||| |||||| |||||||||||||| | |||||||||||||  |||||||||||||||||||    
T  25956847 gcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttcacaatatata 25956748  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  25956747 aatattctcacattaatcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttc 25956648  T
Q  200 atatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
      ||||||||||||||||| | || |||||||||||||||| |||||| || ||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  25956647 --atatataacatttgcaactccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 25956550  T
Q  299 gtcatcctctctg 311  Q
     ||||||||||||    
T  25956549 atcatcctctctg 25956537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 27851065 - 27851373
Alignment:
Q  3 aaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaa 102  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  27851065 aaggcaacaccatcaaataatttgcagcaagtcaacatcgacaataatcatcaaatacaaccaatacaacttcatatcagcatctttcacaatatataaa 27851164  T
Q  103 taatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcat 201  Q
    || ||||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  27851165 tattctcacattaagcatcaaagtaaatcatattcagcacaacaacaagacaacatcatttaaacatacacaacaagtaaccatcaataataatcttcat 27851264  T
Q  202 atatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagt 300  Q
    ||||| |  | || |||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||| |||||||||||| |    
T  27851265 atata-acaaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaggtaaatcatcaata-taaatcatcttatt 27851362  T
Q  301 catcctctctg 311  Q
    |||||||||||    
T  27851363 catcctctctg 27851373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 20734304 - 20734128
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||| ||||||||||||| || ||| | ||| |||||||||||| ||  |||||||||| || |||||||| ||||||      
T  20734304 attcatcacaacagcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatc--atatataacaattacaatttcatatcaacgt 20734207  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||| |||||||| ||| ||||||||||||    
T  20734206 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaata-taaatcattttattcatcctctctg 20734128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 19399766 - 19399928
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||  ||||| ||||||| |||||||| ||| |||| |||||| |||||||||| ||| | |||||||||||||   ||||||||||||||||||    
T  19399766 gcaaggcagaaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacatctttcacaatatata 19399865  T
Q  101 aataatctcaca-ttaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| | ||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  19399866 aatattttcacatttaatcatcaaagtaaaccatattcatcacaacagtaagacaacatcatt 19399928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 31630752 - 31630622
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataa 101  Q
    |||| ||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | || ||||||||||   |||||||||||||||||||    
T  31630752 caagacaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattataacttcatatcaacatctttcacaatatataa 31630653  T
Q  102 ataatctcacattaatcatc-aagtaaatca 131  Q
    ||| |||||||||||||||| ||||||||||    
T  31630652 atattctcacattaatcatcaaagtaaatca 31630622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 289
Target Start/End: Original strand, 22420981 - 22421117
Alignment:
Q  152 caacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat- 250  Q
    ||||| |||||| |||||| |||||| | ||  |||||||||||| |||||||||  ||| || |||||||| ||||||  ||||||||||||||||||     
T  22420981 caacaccatttagacatatgcaacaagtcactatcaataataatcatcatatata--acaattacaatttcatatcaacgtctttcacaatatataaata 22421078  T
Q  251 ttttcacatttaaccatcaccgtaaataaacaatattaa 289  Q
    ||||||||||||| |||||  |||||| | |||||||||    
T  22421079 ttttcacatttaatcatcaaagtaaatcatcaatattaa 22421117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 18927832 - 18927934
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||||||||    
T  18927832 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaatatata 18927931  T
Q  101 aat 103  Q
    |||    
T  18927932 aat 18927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 298
Target Start/End: Original strand, 2201133 - 2201277
Alignment:
Q  152 caacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat- 250  Q
    ||||| |||||| |||||| || ||| | ||| |||||||||||| |||||||||  ||| || |||||||| ||||||  ||||||||||||||||||     
T  2201133 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatata--acaattacaatttcatatcaacgtctttcacaatatataaata 2201230  T
Q  251 ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    |||||| |||||| |||||  |||||| | ||||||| ||||||||||    
T  2201231 ttttcatatttaatcatcaaagtaaatcatcaatatt-aatcatctta 2201277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 28708636 - 28708732
Alignment:
Q  7 caacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaat 103  Q
    |||||| || ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | ||||||||| |||  ||||||||||||||||||||||    
T  28708636 caacactattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcttatgagcatctttcacaatatataaat 28708732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 34297059 - 34296953
Alignment:
Q  202 atatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagt 300  Q
    |||||||||| || |||||||| ||||||  |||||||||||||||||| ||||||||| ||| |||||  |||||| | || |||| |||||||||| |    
T  34297059 atatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatctaatcatcaaagtaaatcatcattatt-aatcatcttatt 34296961  T
Q  301 catcctct 308  Q
    ||||||||    
T  34296960 catcctct 34296953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34297113 - 34296980
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||| |||||||| ||||||| |||||||| ||| |||  | |||| |||||| ||| ||| | ||||| |||||||   | ||||||||||||||||    
T  34297113 gcaaggaaacaccattaaataatatgcagcaagtcaacattaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatata 34297014  T
Q  101 aataatctcacat-taatcatc-aagtaaatcat 132  Q
    |||| | |||||| |||||||| |||||||||||    
T  34297013 aatattttcacatctaatcatcaaagtaaatcat 34296980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 18708656 - 18708749
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||  |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  18708656 gcaaggcatcaccattaaataatatgcagcaagtcaacataaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 18708749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 18927904 - 18927953
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaatttttcacatttaaccatca 269  Q
    |||| ||||||| |||||||||||||||||| |||||||||||| |||||    
T  18927904 ttcatatcaacatctttcacaatatataaatctttcacatttaatcatca 18927953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23151162 - 23151069
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||  |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  23151162 gcaaggcagcaccattaaataatatgcagcaagtcaacattaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 23151069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 19399838 - 19399888
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatca 269  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||| |||||    
T  19399838 ttcatatcaacatctttcacaatatataaatattttcacatttaatcatca 19399888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 27322303 - 27322221
Alignment:
Q  12 ccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  27322303 ccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 27322221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 20734267 - 20734158
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-a 122  Q
    |||||||| ||| |||| | |||| |||||| ||| ||| | ||||| |||||||   | |||||||||||||||||||| | ||||| ||||||||| |    
T  20734267 tgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 20734168  T
Q  123 agtaaatcat 132  Q
    ||||||||||    
T  20734167 agtaaatcat 20734158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 13844435 - 13844744
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataa 101  Q
    ||||||||||||||||||||||||  ||||| |||||||| |||||| | |||||||||||| | |||||||||||||  ||||||||||||||||||||    
T  13844435 caaggcaacaccatcaaataatttatagcaagtcatcatcaacaataataatcaaatacaaccattacaacttcatatcagcatctttcacaatatataa 13844534  T
Q  102 ataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttca 200  Q
    ||| |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||     
T  13844535 atattctcacattaataatcaaagtaaatcatattcatcacaacagtaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttc- 13844633  T
Q  201 tatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttag 299  Q
     ||||||||||||||||| | || |||||||||||||||| |||||| || ||||||||||||| ||||| ||||||| || |||||||||||||||||     
T  13844634 -atatataacatttgcaactccatatcaacaactttcacattatatagatattttcacatttaatcatcaacgtaaatcaataatattaaatcatcttaa 13844732  T
Q  300 tcatcctctctg 311  Q
    ||||||||||||    
T  13844733 tcatcctctctg 13844744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 46642729 - 46643038
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||||||| || || |||| |||||||  ||| |||| |||||| |||||||||| ||| | |||||||||||||   | ||||||||| | ||||    
T  46642729 gcaaggcaacactattaactaatatgcagcacgtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacgtctttcacagtttata 46642828  T
Q  101 aataatctcacattaatcatcaagt-aaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||  |||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||  |||||||| |||||    
T  46642829 aatcttctcacattaatcatcaaattaaatcatattcatcacaacagcaaggcagcatcatttaaacatatacaacaagtaaccaccaataatattcttc 46642928  T
Q  200 atatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
      |||| ||||| || ||| |||| || ||||||||||||||||||||||| ||||| || |||| ||||| | | ||  ||||||||||||||||||||    
T  46642929 --atatgtaacaattacaacttcatattaacaactttcacaatatataaatcttttcgca-ttaatcatcaactttaaacaacaatattaaatcatctta 46643025  T
Q  299 gtcatcctctctg 311  Q
    |||||||||||||    
T  46643026 gtcatcctctctg 46643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 15868925 - 15868765
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| |||||||||||||||||||| ||| |||| |||||| |||||| ||| ||  | |||||||||||||   |||| ||||||||||||     
T  15868925 gcaaggcaacaacatcaaataatttgcagcaagtcaacatcaacaataatcatcagatataatcattacaacttcatatcatcatcattcacaatatat- 15868827  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  15868826 aatattctctcattaatcatcaaagtaaatcatattcatcacaacaacaaaacaacatcatt 15868765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 362141 - 362272
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | || ||||||||||   | ||||||||||||||||    
T  362141 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattataacttcatatcaacgtctttcacaatatata 362240  T
Q  101 aataatctcacattaatcatc-aagtaaatca 131  Q
    |||| |||||||||||||||| ||||||||||    
T  362241 aatattctcacattaatcatcaaagtaaatca 362272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 15099243 - 15099464
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaat-atat 99  Q
    ||||||||||||||| ||||| | |||||||| ||| |||| |||||| || ||||||||||| | ||| |||||||||  |||||||||||||| ||||    
T  15099243 gcaaggcaacaccattaaatagtatgcagcaagtcaacatcaacaataatcgtcaaatacaaccattacgacttcatataagcatctttcacaattatat 15099342  T
Q  100 aaataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    ||||| ||        ||||  |||| |||||||||||| || |||||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||     
T  15099343 aaatattc--------atca--aagtcaatcatattcattacgacagcaagacaacatcttttaaacatatacagcaagtaaccatcattaataatctt- 15099431  T
Q  200 atatatataacatttgcaatttcacatcaacaac 233  Q
     ||| ||||||| || ||| |||| |||||||||    
T  15099432 -tatgtataacaatttcaacttcatatcaacaac 15099464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 52873367 - 52873249
Alignment:
Q  17 aaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcacattaa 116  Q
    ||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   |||||||||||||||||||||| |||||||||||    
T  52873367 aaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatataaatattctcacattaa 52873268  T
Q  117 tcatc-aagtaaatcatat 134  Q
    ||||| |||||||||||||    
T  52873267 tcatcaaagtaaatcatat 52873249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 630990 - 630830
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||||||  ||||||||||||||||||| ||| |||| | |||| |||||||||||||  | |||||||||||||   |||| ||||||||||||     
T  630990 gcaaggcaacaaaatcaaataatttgcagcaagtcaacatcaataataatcatcaaatacaatcattacaacttcatatcatcatcattcacaatatat- 630892  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||| ||||||||  |||||||||||||| ||  |||||||||||    
T  630891 aatattctctcattaatcatcaaagtaaattgtattcatcacaacaacagaacaacatcatt 630830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 33186097 - 33186273
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||| ||||||| ||||||||||||| || || ||| | ||| |||||||||||| ||  |||||||||| || ||| |||| ||||||      
T  33186097 attcatcacaacaacaagacatcatcatttaaacaaatgcagcaagtcaccatcaataataatcatc--atatataacaattacaacttcatatcaacgt 33186194  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||| ||||||||||| ||||||||||||| |||||  |||||| |  |||||| |||||||||| ||||||||||||    
T  33186195 ctttcataatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 33186273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 32851281 - 32851439
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||| |||||||||| ||| ||| |||| |||||| ||||||||||||   | |||||||||||||   |||| |||||||||| |     
T  32851281 gcaaggcaacaacatcatataatttgcaacaagtcaacatcaacaataatcatcaaatacattcattacaacttcatatcatcatcattcacaatatgt- 32851379  T
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||||||| || |||||||||||||| | ||  |||||||||||    
T  32851380 aatattctctcattaatcatcaagt-aaccatattcatcacaataacagaacaacatcatt 32851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9923305 - 9923407
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||||||||    
T  9923305 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaatatata 9923404  T
Q  101 aat 103  Q
    |||    
T  9923405 aat 9923407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 22634339 - 22634269
Alignment:
Q  90 cacaatatataaataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  22634339 cacaatatataa-tattctctcattaatcatcaagtaaatcatattcatcacaacaacaaaacagcatcatt 22634269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 13812936 - 13812865
Alignment:
Q  90 cacaatatataaataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||||||||||| || |||| ||||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  13812936 cacaatatataa-tattctctcattaatcatctaagtaaatcatattcatcacaacaacaaaacaacatcatt 13812865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 20157409 - 20157349
Alignment:
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  20157409 aatattctctcattaatcatcaagtaaatcatattcatcacaacaacaaaacagcatcatt 20157349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11479554 - 11479452
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| | |||| || |||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||||||||    
T  11479554 gcaaggcagcgccattaagtaatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaatatata 11479455  T
Q  101 aat 103  Q
    |||    
T  11479454 aat 11479452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35812333 - 35812231
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||| ||||| ||| | ||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||||||||    
T  35812333 gcaagacaacatcattagataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaatatata 35812234  T
Q  101 aat 103  Q
    |||    
T  35812233 aat 35812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 15880744 - 15880821
Alignment:
Q  185 tcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaa 263  Q
    |||||||||||| |||||||||  ||| || |||||||| ||||||  |||||||||||||||||| |||||||||||||    
T  15880744 tcaataataatcatcatatata--acaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaa 15880821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 9923377 - 9923426
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaatttttcacatttaaccatca 269  Q
    |||| ||||||| |||||||||||||||||| |||||||||||| |||||    
T  9923377 ttcatatcaacatctttcacaatatataaatctttcacatttaatcatca 9923426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 11479482 - 11479433
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaatttttcacatttaaccatca 269  Q
    |||| ||||||| |||||||||||||||||| |||||||||||| |||||    
T  11479482 ttcatatcaacatctttcacaatatataaatctttcacatttaatcatca 11479433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 14185253 - 14185331
Alignment:
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||||||||| | ||||  |||||  || |||||||||| |||| |||||||    
T  14185253 ctttcacaatatataaatattttcacatttaaccatcaacttaaaacaacaacgtt-aatcatcttattcatactctctg 14185331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 35812261 - 35812171
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaatttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||| ||||||| |||||||||||||||||| || ||||||||| ||||| | |||||  |||| ||| |||||||||| | || |||||||    
T  35812261 ttcatatcaacatctttcacaatatataaatcttccacatttaatcatcaacttaaatccacaacatt-aatcatcttatttatactctctg 35812171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19609480 - 19609573
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| || | ||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  19609480 gcaaggcagcaccattaaataatatgtaacaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 19609573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 33186134 - 33186243
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-a 122  Q
    |||||||| ||| |||| | |||| |||||| ||| ||| | |||||||||||||   | ||||||| |||||||||||| | ||||| ||||||||| |    
T  33186134 tgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttcataatatataaatattttcacatttaatcatcaa 33186233  T
Q  123 agtaaatcat 132  Q
    ||||||||||    
T  33186234 agtaaatcat 33186243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 28194675 - 28194365
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||  | |||||| |||||| |||||||||||||| | |||||||||||||   ||||||||||||||||||    
T  28194675 gcaaggcaacaccatcaaataatttacagcaggttatcatcaacaataatcatcaaatacaaccattacaacttcatatcaacatctttcacaatatata 28194576  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  28194575 aatattctcacattaatcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttc 28194476  T
Q  200 atatatataacatttgcaatttcacatcaacaactttcacaatatata-aatttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
      ||||||||||||||||| | || |||||||||||||||| |||||| | |||||||||||||| ||||| ||||||| ||||||||||||||||| ||    
T  28194475 --atatataacatttgcaactacatatcaacaactttcacattatatagattttttcacatttaatcatcaacgtaaatcaacaatattaaatcatccta 28194378  T
Q  299 gtcatcctctctg 311  Q
     ||||| ||||||    
T  28194377 atcatcttctctg 28194365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 43697269 - 43697578
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataa 101  Q
    ||||| |||||||||||||||||| |||||| |||||||| |||||| |||||||||| ||| | |||||||||||||  |||||||||||||||||| |    
T  43697269 caaggtaacaccatcaaataatttacagcaagtcatcatcaacaataatcatcaaataaaaccattacaacttcatatcagcatctttcacaatatatca 43697368  T
Q  102 ataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttca 200  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||| |||||  ||||||||||||||     
T  43697369 ataatctcacattaatcatcaaagtaaatcatatttatcacaacagcaagacagcatcatataaacatatacagcaagtaaccaacaataataatcttc- 43697467  T
Q  201 tatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttag 299  Q
     ||||||||||||||||| | || |||||||||||||||| |||||| || ||||||||||||| ||||| | ||||| ||||||||||||||||||||     
T  43697468 -atatataacatttgcaactccatatcaacaactttcacactatatagatcttttcacatttaatcatcaacttaaatcaacaatattaaatcatcttaa 43697566  T
Q  300 tcatcctctctg 311  Q
    ||||||||||||    
T  43697567 tcatcctctctg 43697578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 43543005 - 43543139
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||  | |||||||||||||   ||||||||||||||||||    
T  43543005 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaatcattacaacttcatatcaacatctttcacaatatata 43543104  T
Q  101 aataatctcacattaatcatc-aagtaaatcatat 134  Q
    |||| |||||||||||||||| |||||||||||||    
T  43543105 aatattctcacattaatcatcaaagtaaatcatat 43543139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 35981914 - 35981723
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaat-atat 99  Q
    ||||||||||||||| ||||||| |||| ||| ||| |||| |||||| || ||||||||||| | ||| |||||||||  |||||||||||||| ||||    
T  35981914 gcaaggcaacaccattaaataatatgcaacaagtcaacatcaacaataatcgtcaaatacaaccattacgacttcatataagcatctttcacaattatat 35981815  T
Q  100 aaataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    ||||| ||        ||||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||    
T  35981814 aaatattc--------atca--aagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattagtaatcttc 35981725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 20636747 - 20636939
Alignment:
Q  5 ggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaata 104  Q
    ||||||||||| ||||||| |||||||| ||| |||| |||||| || ||||||||||| | ||| |||||||||   |||||||||||||   || |||    
T  20636747 ggcaacaccattaaataatatgcagcaagtcaacatcaacaataatcgtcaaatacaaccattacgacttcatataaacatctttcacaat---tatata 20636843  T
Q  105 atctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatata 204  Q
    |    | ||| ||||  ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||| ||    
T  20636844 a----aaattcatca--aagaaaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatattcatgta 20636937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 46382777 - 46382652
Alignment:
Q  5 ggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaata 104  Q
    ||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||  ||||||||    
T  46382777 ggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaataaaaccattacaacttcatatcaacatctttcacaa--tataaata 46382680  T
Q  105 atctcacattaatcatc-aagtaaatca 131  Q
     |||||||||||||||| ||||||||||    
T  46382679 ttctcacattaatcatcaaagtaaatca 46382652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 49261346 - 49261430
Alignment:
Q  122 aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatata 206  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||| ||||| ||||| ||||||||||||||||| ||||    
T  49261346 aagtaaatcatattcatcacgacagcaagacagtatcatttaaacatatataacaagtaaccatcaataataatcttcatgtata 49261430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 289
Target Start/End: Complemental strand, 51274445 - 51274290
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||| ||| |||| | ||||||||||||| || ||| | ||| |||||||||||| ||   ||||||||| || ||| |||| |||||||     
T  51274445 attcatcacaacaacaaaacaaaaacatttaaacatatgcatcaagtcaccatcaataataatcatc--ttatataacaattacaacttcatatcaacat 51274348  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaa 289  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| | |||||||||    
T  51274347 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaa 51274290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 12328660 - 12328538
Alignment:
Q  185 tcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaa 283  Q
    |||||||||||| |||||||||  ||| || ||  |||| ||||||  |||||||||||||||||| |||||| |||||| |||||  |||||| | |||    
T  12328660 tcaataataatcatcatatata--acaattacatcttcatatcaacgtctttcacaatatataaatattttcaaatttaatcatcaaagtaaatcatcaa 12328563  T
Q  284 tattaaatcatcttagtcatcctctc 309  Q
    |||| |||||||||| ||||||||||    
T  12328562 tatt-aatcatcttattcatcctctc 12328538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 8885459 - 8885555
Alignment:
Q  202 atatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    |||||| ||| || |||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||||| ||||||||||    
T  8885459 atatattacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 8885555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 48301020 - 48301121
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataa 101  Q
    |||| ||||||||| ||||||| |||||||| ||| |||| |||||| | |||  ||  ||| | |||||||||||||   |||||||||||||||||||    
T  48301020 caagacaacaccattaaataatatgcagcaagtcaacatcaacaataataatctcatgtaaccattacaacttcatatcaacatctttcacaatatataa 48301119  T
Q  102 at 103  Q
    ||    
T  48301120 at 48301121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 51274366 - 51274299
Alignment:
Q  67 tacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||||||||||||   |||||||||||||||||||||| | ||||| ||||||||| |||||||||||    
T  51274366 tacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 51274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 5889401 - 5889092
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||| | |||||||||||||  |||||||||||||||||||    
T  5889401 gcaaggcaacaccatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttcacaatatata 5889302  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  5889301 aatattctcacattaatcatcaaagtaaatcatattcatcacgacag-aagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttc 5889203  T
Q  200 atatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
      || ||||||| |||||| | || |||||||||||||||| |||||| || ||||||||||||| ||||| ||||||| ||||||||||||||||| ||    
T  5889202 --atgtataacaattgcaactacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcata 5889105  T
Q  299 gtcatcctctctg 311  Q
     ||||||||||||    
T  5889104 atcatcctctctg 5889092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 29915299 - 29915150
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||||| ||||  |||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||||||||||||||    
T  29915299 gcaaggcaacgccattcaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatata 29915200  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaa 149  Q
    |||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  29915199 aatattctcacattaatcatcaaagtagatcatattcatcacaacagcaa 29915150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 12122378 - 12122202
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||||||||||| |||||||||||||||| |  ||| | ||| |||||||||||| ||  |||||||||| || ||| |||| ||||||      
T  12122378 attcatcacaacagcaagacatcatcatttaaacatatgccgcaagtcaccatcaataataatcatc--atatataacaattacaacttcatatcaacgt 12122281  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| |  |||||| |||||||||| ||||||||||||    
T  12122280 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 12122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 21741757 - 21741563
Alignment:
Q  3 aaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaat-atataa 101  Q
    ||||||||||||| ||||||| |||||||| ||| |||| |||||| || ||||||||||| | ||| | |||||||  |||||||||||||| ||||||    
T  21741757 aaggcaacaccattaaataatatgcagcaagtcaacatcaacaataatcgtcaaatacaaccattacgatttcatataagcatctttcacaattatataa 21741658  T
Q  102 ataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcat 201  Q
    ||| ||        ||||  || | |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  21741657 atattc--------atca--aattcaatcatatacatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcat 21741568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 21871774 - 21871627
Alignment:
Q  14 atcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcacat 113  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||||||||  | |||||||||||||   |||| |||||||||||| |||| |||| |||    
T  21871774 atcaaataatttgcagcaagtcaacatcaacaataatcatcaaatacaatcattacaacttcatatcatcatcattcacaatatat-aatattctctcat 21871676  T
Q  114 taatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    ||||| || |||||||||||||||||||||||| ||||||| |||||||    
T  21871675 taatcgtcaaagtaaatcatattcatcacaacaacaagacagcatcatt 21871627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 21876054 - 21875907
Alignment:
Q  14 atcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcacat 113  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||||||||  | |||||||||||||   |||| |||||||||||| |||| |||| |||    
T  21876054 atcaaataatttgcagcaagtcaacatcaacaataatcatcaaatacaatcattacaacttcatatcatcatcattcacaatatat-aatattctctcat 21875956  T
Q  114 taatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    ||||| || |||||||||||||||||||||||| ||||||| |||||||    
T  21875955 taatcgtcaaagtaaatcatattcatcacaacaacaagacagcatcatt 21875907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 21555236 - 21555060
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||||||||||| || ||| | ||| |||||||||||| |||||||||  ||| || ||| || |  |||||      
T  21555236 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatata--acaattacaactttatgtcaacgt 21555139  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||| |||||   ||||  | ||||||||| |||||||| ||||||||||||    
T  21555138 ctttcacaatatataaatattttcacatttaatcatcaaactaaaacatcaatattaa-tcatcttattcatcctctctg 21555060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 21557902 - 21557726
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||| ||||||||||||||||||||||||||||| || ||| | ||  |||||||||||| ||  |||||||||| || ||| |||| ||||||      
T  21557902 attcatcataacagcaagacaacatcatttaaacatatgcagcaagtcactatcaataataatcatc--atatataacaattacaacttcatatcaacgt 21557805  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||| |||||   ||||  | ||||||| |||||||||| ||||||||||||    
T  21557804 ctttcacaatatataaatattttcacatttaatcatcaaactaaaacatcaatatt-aatcatcttattcatcctctctg 21557726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 309
Target Start/End: Original strand, 31455686 - 31455862
Alignment:
Q  134 ttcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcat-atatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||||||||||||||||||||||||||| || ||| | ||| ||||||||||||   || || ||||||  || ||| |||| ||||||      
T  31455686 ttcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcaatatcatttataacgattacaacttcatatcaacgt 31455785  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctc 309  Q
     ||||||||||||||||| ||||||||||||| |||||  |||||  | ||||||| |||||||||| ||||||||||    
T  31455786 ttttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctc 31455862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 30615751 - 30615926
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||| ||||||||||||| |||| ||||||||||| || ||| | ||| ||| |||||||| ||| || ||||||| || ||| |||| ||||||      
T  30615751 attcatcgcaacagcaagacatcatcgtttaaacatatgcagcaagtcaccatcattaataatcatca-at-tataacaattacaacttcatatcaacgt 30615848  T
Q  233 ctttcacaatatataaatttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    ||||||||||||||||  ||||||||||||| ||| |  |||||| | ||||||| |||||||||| ||||||||||||    
T  30615849 ctttcacaatatataatattttcacatttaatcataaaagtaaattatcaatatt-aatcatcttattcatcctctctg 30615926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 309
Target Start/End: Original strand, 31455073 - 31455249
Alignment:
Q  134 ttcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcat-atatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||||||||||||||||||||||||||| || ||| | ||| ||||||||||||   || || ||||||  || ||| || | ||||||      
T  31455073 ttcatcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcaatatcatttataacgattacaacttaatatcaacgt 31455172  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctc 309  Q
     ||||||||||||||||| ||||||||||||| |||||  |||||  | ||||||| |||||||||| ||||||||||    
T  31455173 ttttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctc 31455249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 298
Target Start/End: Original strand, 24212382 - 24212526
Alignment:
Q  152 caacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat- 250  Q
    |||||||||||| |||||| || ||| | ||| |||||| ||||| |||||||||  ||| || ||| |||| ||||||  ||||||||||||||||||     
T  24212382 caacatcatttagacatatgcagcaagtcaccatcaatattaatcatcatatata--acaattacaacttcatatcaacgtctttcacaatatataaata 24212479  T
Q  251 ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    ||||||||||||| |||||  |||||| | ||||||| ||||||||||    
T  24212480 ttttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 24212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 311
Target Start/End: Original strand, 36460170 - 36460341
Alignment:
Q  138 tcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttc 237  Q
    ||||||| ||||||||||| |||| ||  |||| || ||| | | | | |||||||||| |||||||||  ||| || |||||||| ||||||  |||||    
T  36460170 tcacaaccgcaagacaacaccattaaataatatgcagcaagtcaacattaataataatcatcatatata--acaattacaatttcatatcaacgtctttc 36460267  T
Q  238 acaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    ||||||||||||| ||||||||||||| |||||  |||||| | || |||| |||||||||  ||||||||||||    
T  36460268 acaatatataaatattttcacatttaatcatcaaagtaaatcatcattatt-aatcatcttgttcatcctctctg 36460341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 298
Target Start/End: Original strand, 35852686 - 35852781
Alignment:
Q  203 tatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    ||||||||| || |||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||||| ||||||||||    
T  35852686 tatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 35852781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 24767463 - 24767409
Alignment:
Q  90 cacaatatataaataatctcacattaatcatcaagtaaatcatattcatcacaaca 145  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  24767463 cacaatatataa-tattctctcattaatcatcaagtaaatcatattcatcacaaca 24767409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 17875209 - 17875282
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatata 206  Q
    |||| |||||||||||||| || ||||||||||||||| || ||| | ||| |||||||||||| |||||||||    
T  17875209 attcttcacaacagcaagataatatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatata 17875282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 36460178 - 36460311
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||| ||||||||| ||||||| |||||||| ||| |||  | |||| |||||| ||| ||| | ||||| |||||||   | ||||||||||||||||    
T  36460178 gcaagacaacaccattaaataatatgcagcaagtcaacattaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatata 36460277  T
Q  101 aataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||| | ||||| ||||||||| |||||||||||    
T  36460278 aatattttcacatttaatcatcaaagtaaatcat 36460311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 12122321 - 12122232
Alignment:
Q  45 aatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||| |||||| ||| ||| | |||||||||||||   | |||||||||||||||||||| | ||||| ||||||||| |||||||||||    
T  12122321 aataatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 12122232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 24212400 - 24212509
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-a 122  Q
    |||||||| ||| |||| | | || |||||| ||| ||| | |||||||||||||   | |||||||||||||||||||| | ||||| ||||||||| |    
T  24212400 tgcagcaagtcaccatcaatattaatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 24212499  T
Q  123 agtaaatcat 132  Q
    ||||||||||    
T  24212500 agtaaatcat 24212509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 85143 - 85376
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||||||||||||| ||||||||||||| ||| |||| |||||| |||||||||||||| | |||||||||||||   ||||||||||||||||||    
T  85143 gcaaggcaacaccatcaattaatttgcagcaagtcaacatcaacaataatcatcaaatacaactattacaacttcatatcaacatctttcacaatatata 85242  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||    
T  85243 aatattctcacattaatcatcaaagtaaatcatattcatcacaacagcaagacaacttcatttaaacatatacatcaagtaaccatcaataataatcttc 85342  T
Q  200 atatatataacatttgcaatttcacatcaacaactt 235  Q
      ||||||||||||||||| | || |||||||||||    
T  85343 --atatataacatttgcaactccatatcaacaactt 85376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 18440073 - 18439857
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||| ||||||||||||||||||| |||||  |||||||| |||||| |||||||||||||| | |||||||||||||   ||||||||||||||||||    
T  18440073 gcaagacaacaccatcaaataatttacagcaggtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcatcatctttcacaatatata 18439974  T
Q  101 aataatctcacattaatcatcaa-gtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
     ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  18439973 gatattctcacattaatcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttc 18439874  T
Q  200 atatatataacatttgcaa 218  Q
    |||  ||||||||||||||    
T  18439873 ata--tataacatttgcaa 18439857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 20630323 - 20630147
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||||||||||||||    
T  20630323 gcaaggcaacaacatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatata 20630224  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaaca 176  Q
    |||| ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20630223 aatattctcacattaatcgtcaaagtaaatcatattcattacaacagcaagacaacatcatttaaacatatacaaca 20630147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 12269465 - 12269773
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||||||| || || |||| |||||||  ||| |||| |||||| |||||||||| ||  | |||||||||||||   | || |||| ||| ||||    
T  12269465 gcaaggcaacactattaactaatatgcagcacgtcaacatcaacaataatcatcaaatataatcattacaacttcatatcaacgtccttcaaaatttata 12269564  T
Q  101 aataatctcacattaatcatcaagt-aaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||  |||||||||||||||||| | ||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||  | |||||| |||||    
T  12269565 aatcttctcacattaatcatcaacttaaatcatattcatgacaacagcaaggcagcatcatttaaacatatacaacaagtaaccaccgataatattcttc 12269664  T
Q  200 atatatataacatttgcaatttcacatcaacaactttcacaatatataaatttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttag 299  Q
    |||| || || |  | ||| |||| |||||||||||||||||||||||||| |||  || |||| ||||| | | ||  |||||||||||||||||||||    
T  12269665 atatgtaaaaaa--tacaacttcatatcaacaactttcacaatatataaatctttttca-ttaatcatcaactttaaacaacaatattaaatcatcttag 12269761  T
Q  300 tcatcctctctg 311  Q
    ||||||||||||    
T  12269762 tcatcctctctg 12269773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 49970096 - 49969934
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||  ||||| ||||||| |||||||| ||| |||| |||||| |||||||||| ||| | |||||||||||||   ||||||||||||||||||    
T  49970096 gcaaggcagtaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacatctttcacaatatata 49969997  T
Q  101 aataatctcaca-ttaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| | ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  49969996 aatattttcacatttaatcatcaaagtaaatcatattcatcacaacaggaagacaacatcatt 49969934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 31224811 - 31224635
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||||||||||| || ||| | ||| |||||||||||| ||  |||||||||| || ||| |||| ||||||      
T  31224811 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatc--atatataacaattacaacttcatatcaacgt 31224714  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||| ||||||||| ||||||||||||| |||||  |||||  | ||||||| |||||||||| ||||||||||||    
T  31224713 ctttcacattatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctctg 31224635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 15447854 - 15447681
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||||||||||| || ||| | ||| ||||||||||||     |||||||||| || ||| |||| ||||||      
T  15447854 attcatcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatc-----atatataacaattacaacttcatatcaacgt 15447760  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||| ||||| ||| ||||||||||||| |||||  |||||| | ||||||| |||||||||| ||||||||||||    
T  15447759 ctttcacattatatgaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctctg 15447681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 31415399 - 31415534
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||||||||||| || ||| | ||| |||||||||||| ||  |||||||||| || ||| |||| ||||||      
T  31415399 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatc--atatataacaattacaacttcatatcaacgt 31415496  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatca 269  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  31415497 ctttcacaatatataaatattttcacatttaatcatca 31415534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 1465636 - 1465441
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaat-atata 100  Q
    |||||||||||||| ||||||| |||||||| ||| |||| |||||| || |||||| |||| | ||| |||||||||  |||||||||||||| |||||    
T  1465636 caaggcaacaccattaaataatatgcagcaagtcaacatcaacaataatcgtcaaatccaaccattacgacttcatataagcatctttcacaattatata 1465537  T
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttca 200  Q
    |||| ||        ||||  |||| |||||||||||||||  |||||||||||||||||||||||||||| | ||| ||||| ||| ||||||||||||    
T  1465536 aatattc--------atca--aagtcaatcatattcatcacggcagcaagacaacatcatttaaacatatagagcaagtaaccatcattaataatcttca 1465447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 12852585 - 12852440
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatac-aacttcatattcgcatctttcacaatatat 99  Q
    ||||||||||| ||||||||||||| |||||| ||| |||| |||||| |||||||||||||  | ||| ||||||||||   |||| | ||||||||||    
T  12852585 gcaaggcaacaacatcaaataatttacagcaagtcaacatcaacaataatcatcaaatacaatcattacaaacttcatatcatcatcatccacaatatat 12852486  T
Q  100 aaataatctcacattaatcatc-aagtaaatcatattcatcacaaca 145  Q
     |||| |||| || |||||||| ||||||||||||||||||||||||    
T  12852485 -aatattctctcaataatcatcaaagtaaatcatattcatcacaaca 12852440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 1989004 - 1988912
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||| |||||||||||||||| |||||| || ||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  1989004 ttcatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtgaatcaacaatattaaatcatcttaatcatcctctctg 1988912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 23413464 - 23413322
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||| ||||| |||||| ||||| ||| ||| ||| | || ||| || |||||||||||||  | |||||||||||||   |||| |||||||||| ||    
T  23413464 gcaagacaacaacatcaa-taattcgcaacaagtcaacgtcaacagtaatcatcaaatacaatcattacaacttcatatcatcatcattcacaatatgta 23413366  T
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaaca 145  Q
    | || |||| |||||||||||||||||||||||||||||||||||    
T  23413365 a-tattctctcattaatcatcaagtaaatcatattcatcacaaca 23413322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 14665600 - 14665670
Alignment:
Q  90 cacaatatataaataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  14665600 cacaatatataa-tattctctcattaatcatcaagtaaatcatattcatcacaacaacaaaacaacatcatt 14665670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 49389740 - 49389661
Alignment:
Q  127 aatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatata 206  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| || || || | |||||| |||||||| ||||    
T  49389740 aatcatattcatcacgacagcaagacaacatcatttaaacatatacaataagtacccattaataatgatcttcatgtata 49389661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 11912983 - 11913092
Alignment:
Q  202 atatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagt 300  Q
    |||||||||| || |||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||  |||||| | || |||| |||||||||| |    
T  11912983 atatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcattatt-aatcatcttatt 11913081  T
Q  301 catcctctctg 311  Q
    |||||||||||    
T  11913082 catcctctctg 11913092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 49389896 - 49389818
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatat 79  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| |||||||||| ||| | |||||||||||||    
T  49389896 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatcaaatataacaattacaacttcatat 49389818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 5841943 - 5842039
Alignment:
Q  7 caacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaat 103  Q
    |||||| || ||||||| |||||||| ||| |||| |||||| |||||||||| ||| | ||||||||| |||  ||||||||||||||||||||||    
T  5841943 caacactattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcttatgagcatctttcacaatatataaat 5842039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 14501029 - 14501187
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||| |||||||||| ||| ||| |||| |||||| ||||||||||||   | |||||||||||||   |||| ||||| | || |     
T  14501029 gcaaggcaacaacatcatataatttgcaacaagtcaacatcaacaataatcatcaaatacattcattacaacttcatatcatcatcattcacgaaatgt- 14501127  T
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||||||| || |||||||||||||| | ||  |||||||||||    
T  14501128 aatattctctcattaatcatcaagt-aaccatattcatcacaataacagaacaacatcatt 14501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 6808184 - 6808287
Alignment:
Q  185 tcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaa 283  Q
    |||||||||||| |  ||||||||||| || |||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||  |||||| | |||    
T  6808184 tcaataataatcat--tatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaa 6808281  T
Q  284 tattaa 289  Q
    ||||||    
T  6808282 tattaa 6808287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 45797074 - 45797213
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||| |||||| ||| ||| ||| |||| |||||| ||||||||||||   | |||||||||||||   |||| |||||||||| |     
T  45797074 gcaaggcaacaacatcatataatt-gcaacaagtcaacatcaacaataatcatcaaatacattcattacaacttcatatcatcatcattcacaatatgt- 45797171  T
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaa 143  Q
    |||| |||| ||||||||||||||| || ||||||||||||||    
T  45797172 aatattctctcattaatcatcaagt-aaccatattcatcacaa 45797213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 40811994 - 40812096
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||| ||| |||||| ||||||| |||||||| ||| |||| |||||| |||||  ||| ||| | |||||||||||||   ||||||||||||||||||    
T  40811994 gcaaagcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatcccatataaccattacaacttcatatcaacatctttcacaatatata 40812093  T
Q  101 aat 103  Q
    |||    
T  40812094 aat 40812096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11912929 - 11913062
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||| |||| ||| ||| |||| | |||| | |||| ||| ||| | ||||| |||||||   | ||||||||||||||||    
T  11912929 gcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcacaatatata 11913028  T
Q  101 aataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||| | ||||| ||||||||| |||||||||||    
T  11913029 aatattttcacatttaatcatcaaagtaaatcat 11913062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 17538263 - 17538356
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||  |||||||||||||||   ||||||||||||    
T  17538263 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataatcaatacaacttcatatcaacatctttcacaa 17538356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 40807152 - 40807245
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  40807152 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 40807245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 14668756 - 14668825
Alignment:
Q  90 cacaatatataaataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||||||||||| || |||| ||||||||||||||||| ||||||||||||||||| ||| ||| |||||||    
T  14668756 cacaatatataa-tattctctcattaatcatcaagtaa-tcatattcatcacaacaacaaaacagcatcatt 14668825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30175410 - 30175307
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||| || ||||| ||| |||| |||||| |||||  ||| | | | |||||||||||||   ||||||||||| ||||||    
T  30175410 gcaaggcaacaccattaaataatatgaagcaagtcaacatcaacaataatcatcccatatatccattacaacttcatatcaacatctttcacagtatata 30175311  T
Q  101 aata 104  Q
    ||||    
T  30175310 aata 30175307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 22307479 - 22307386
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||  | |||||||||||||   ||||||||||||    
T  22307479 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataatcattacaacttcatatcaacatctttcacaa 22307386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 31415436 - 31415535
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatcaa 123  Q
    |||||||| ||| |||| | |||| |||||| ||| ||| | |||||||||||||   | |||||||||||||||||||| | ||||| |||||||||||    
T  31415436 tgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 31415535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 1989059 - 1988977
Alignment:
Q  18 aataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||  |||||| ||| |||| |||||| |||||||||||||| | |||||||||||||   || |||||||| ||||||    
T  1989059 aataattcacagcaagtcaacatcaacaataatcatcaaatacaaccattacaacttcatatcaacaactttcacattatata 1988977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 49389840 - 49389740
Alignment:
Q  204 atataacatttgcaatttcacatcaacaactttcacaatatat--aaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagt 300  Q
    |||||||| || ||| |||| ||||||||||| ||||||||||  |||| ||||||||||||| ||||| | | ||  ||||||||||| ||||||||||    
T  49389840 atataacaattacaacttcatatcaacaactt-cacaatatatctaaatattttcacatttaatcatcaactttaaacaacaatattaattcatcttagt 49389742  T
Q  301 ca 302  Q
    ||    
T  49389741 ca 49389740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 49970024 - 49969974
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatca 269  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||| |||||    
T  49970024 ttcatatcaacatctttcacaatatataaatattttcacatttaatcatca 49969974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 17232516 - 17232749
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||| | |||||| ||| || | |||||| ||||| |||||||| | | |||||||||||   ||||||||||||||||||    
T  17232516 gcaaggcaacaccatcaaataatatacagcaagtcaacagcaacaataatcatctaatacaaccattccaacttcatatcaacatctttcacaatatata 17232615  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||| |||||||||||    
T  17232616 aatattctcacattaatcatcaaagtaaatcatattcatcacaacagcatgacatcatcatttaaacatatacaacaagtaaccatcattaataatcttc 17232715  T
Q  200 atatatataacatttgcaatttcacatcaacaactt 235  Q
      |||| |||||||||||| | || |||||||||||    
T  17232716 --atatgtaacatttgcaactccatatcaacaactt 17232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8468322 - 8468548
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||||||||||||||    
T  8468322 gcaaggcaacaccattaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatata 8468421  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    |||| | |||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||| ||||| ||| |||||||||||    
T  8468422 aatattatcacattaatcatcaaagtaaatcatattcatcacaacagca-------atcatttaaacatatacaacaagtaaccatcattaataatcttc 8468514  T
Q  200 atatatataacatttgcaatttcacatcaacaactt 235  Q
      |||| |||||| ||||| | || |||||||||||    
T  8468515 --atatgtaacatctgcaactccatatcaacaactt 8468548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 14270270 - 14270136
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||||||||||||||    
T  14270270 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatata 14270171  T
Q  101 aataatctcacattaatcatc-aagtaaatcatat 134  Q
    |||| |||||||||||||||| |||||||||||||    
T  14270170 aatattctcacattaatcatcaaagtaaatcatat 14270136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 45847866 - 45847735
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||||||||||||||    
T  45847866 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatata 45847767  T
Q  101 aataatctcacattaatcatc-aagtaaatca 131  Q
    |||| |||||||||||||||| ||||||||||    
T  45847766 aatattctcacattaatcatcaaagtaaatca 45847735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 9389923 - 9389726
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||| || ||||| ||| |||| |||||| || ||||||||||| | ||| |||||||||  ||||||||||||||   ||    
T  9389923 gcaaggcaacaccattaaataatatgtagcaagtcaacatcaacaataatcgtcaaatacaaccattacgacttcatataagcatctttcacaat---ta 9389827  T
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttca 200  Q
     ||||    | ||| ||||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  9389826 tataa----agattcatca--aagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcattaataatcttca 9389733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 15439318 - 15439457
Alignment:
Q  171 acaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatca 269  Q
    ||||||| ||||| ||||||||||||||||||||||  ||| || ||| |||| ||||||||||||||||   |||| || ||||||||||||| |||||    
T  15439318 acaacaagtaaccatcaataataatcttcatatata--acaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatca 15439415  T
Q  270 ccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
     ||||||| |||||||||||||||||||||||||||||||||    
T  15439416 acgtaaatcaacaatattaaatcatcttagtcatcctctctg 15439457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 30821113 - 30820937
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||| |||||||||||||||||||||||| || ||| | ||| |||||||||||| ||  |||||||||| || ||| |||| ||||||      
T  30821113 attcatcacaacaacaagacaacatcatttaaacatatgcagcaagttaccatcaataataatcatc--atatataacaattacaacttcatatcaacgt 30821016  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
     ||||||||||||||||| ||||||||||||| |||||  |||||  | ||||||| |||||||||| ||||||||||||    
T  30821015 atttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctctg 30820937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 308
Target Start/End: Complemental strand, 36686107 - 36685934
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||||||||||| || ||| | ||| |||||||||||| |||||||||  ||| ||  || |||| |||| |      
T  36686107 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatata--acaattaaaacttcatatcagcgt 36686010  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctct 308  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||  | ||||||| |||||||||| |||||||||    
T  36686009 ctttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctct 36685934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 38480232 - 38480367
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||||||||||||||||||||||| |||| || ||| | ||| |||||||||||| ||  |||||||||| || ||| |||| ||||||      
T  38480232 attcatcacaacagcaagacaacatcatttaaatatatgcagcaagtcaccatcaataataatcatc--atatataacaattacaacttcatatcaacgt 38480329  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatca 269  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  38480330 ctttcacaatatataaatattttcacatttaatcatca 38480367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 311
Target Start/End: Original strand, 11092751 - 11092908
Alignment:
Q  152 caacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat- 250  Q
    ||||| ||||||||| ||| |||||| | ||| |||||||||||| |||||||||  ||| || |||||||| ||||||| ||||||||||||||||||     
T  11092751 caacaccatttaaacgtatgcaacaagtcaccatcaataataatcatcatatata--acaattacaatttcatatcaacatctttcacaatatataaata 11092848  T
Q  251 ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    ||||||||||||| |||||  |||||| | ||||||| |||||||||| |||  |||||||    
T  11092849 ttttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcacactctctg 11092908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 37727771 - 37727672
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| |||||||||||||| | |||||||||||||   || |||||||| ||||||    
T  37727771 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatcaaatacaaccattacaacttcatatctacaactttcacattatata 37727672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 311
Target Start/End: Original strand, 11085013 - 11085170
Alignment:
Q  152 caacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat- 250  Q
    ||||| ||||||| | ||| || ||| | ||| |||||||||||| |||||||||  ||| || |||||||| ||||||  ||||||||||||||||||     
T  11085013 caacaccatttaatcgtatgcagcaagtcaccatcaataataatcatcatatata--acaattacaatttcatatcaacgtctttcacaatatataaata 11085110  T
Q  251 ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
     |||||||||||| |||||  |||||| | ||||||| |||||||||| ||||||||||||    
T  11085111 gtttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctctg 11085170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 18302063 - 18302207
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||||||||||| || |||  || |||| |||||| |||||||||||||  | |||||||||||||   | || | ||||||||||     
T  18302063 gcaaggcaacaacatcaaataatttacaacaagccaacatcaacaataatcatcaaatacaatcattacaacttcatatcatcttcatccacaatatat- 18302161  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaaca 145  Q
    |||| |||| || |||||||| ||||||||||||||||||||||||    
T  18302162 aatattctctcaataatcatcaaagtaaatcatattcatcacaaca 18302207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 298
Target Start/End: Complemental strand, 9320567 - 9320423
Alignment:
Q  152 caacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat- 250  Q
    ||||| |||||| |||||| |||||| | ||| |||||||||||| |||||||||  ||| || |||||||| ||||||  ||||||||||||||||||     
T  9320567 caacaccatttagacatatgcaacaagtcaccatcaataataatcatcatatata--acaattacaatttcatatcaacgtctttcacaatatataaata 9320470  T
Q  251 ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    ||||||||||||| |||||   ||||| | ||||||| ||||||||||    
T  9320469 ttttcacatttaatcatcaaaataaatcatcaatatt-aatcatctta 9320423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 37727699 - 37727607
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||| ||| |||||||||||| |||||| || ||||||||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||||    
T  37727699 ttcatatctacaactttcacattatatagatcttttcacatttaatcatcaacgtaaagcaacaatattaaatcatcttaatcatcctctctg 37727607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 15213746 - 15213869
Alignment:
Q  185 tcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaa 283  Q
    |||||||||||| |||||||||  ||| || |||||||| |||||   |||||||||||||||||| ||||||||||||| |||||  |||||| | ||     
T  15213746 tcaataataatcatcatatata--acaattacaatttcatatcaatgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcat 15213843  T
Q  284 tattaaatcatcttagtcatcctctct 310  Q
    |||| |||||||||| |||||||||||    
T  15213844 tatt-aatcatcttattcatcctctct 15213869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12371434 - 12371527
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    ||||||||||||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  12371434 gcaaggcaacaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 12371527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 15213707 - 15213840
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||| |||||||| ||| |||| | |||| |||||| ||| ||| | ||||| |||||||     ||||||||||||||||    
T  15213707 gcaaggcaacaccattaaataatatgcagcaagtcaacatcaataataatcatcatatataacaattacaatttcatatcaatgtctttcacaatatata 15213806  T
Q  101 aataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||| | ||||| ||||||||| |||||||||||    
T  15213807 aatattttcacatttaatcatcaaagtaaatcat 15213840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 9751673 - 9751619
Alignment:
Q  90 cacaatatataaataatctcacattaatcatcaagtaaatcatattcatcacaaca 145  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  9751673 cacaatatataa-tattctctcattaatcatcaagtaaatcatattcatcacaaca 9751619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 11392006 - 11391920
Alignment:
Q  17 aaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaat 103  Q
    ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | ||||||||| |||  ||||||||||||||||||||||    
T  11392006 aaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcttatgagcatctttcacaatatataaat 11391920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13148368 - 13148275
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  13148368 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatctaatataaccattacaacttcatatcaacatctttcacaa 13148275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 2832391 - 2832331
Alignment:
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| |||||||||||||||||||||||||||||| |||| ||| ||| |||||||    
T  2832391 aatattctctcattaatcatcaagtaaatcatattcatcataacaacaaaacagcatcatt 2832331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8852061 - 8851959
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||| ||||| || ||| |||| |||||| |||||  ||| ||| | |||||||| ||||    |||||||||||||||||    
T  8852061 gcaaggcaacaccattaaataatatgcagtaagtcaacatcaacaataatcatcccatataaccattacaactttatatcaaaatctttcacaatatata 8851962  T
Q  101 aat 103  Q
    |||    
T  8851961 aat 8851959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 39267817 - 39267762
Alignment:
Q  90 cacaatatataaataatctcacattaatcatc-aagtaaatcatattcatcacaaca 145  Q
    |||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||    
T  39267817 cacaatatataa-tattctctcattaatcatctaagtaaatcatattcatcacaaca 39267762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 36686070 - 36685971
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatcaa 123  Q
    |||||||| ||| |||| | |||| |||||| ||| ||| | || ||||||||||  || |||||||||||||||||||| | ||||| |||||||||||    
T  36686070 tgcagcaagtcaccatcaataataatcatcatatataacaattaaaacttcatatcagcgtctttcacaatatataaatattttcacatttaatcatcaa 36685971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 38480269 - 38480368
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatcaa 123  Q
    |||||||| ||| |||| | |||| |||||| ||| ||| | |||||||||||||   | |||||||||||||||||||| | ||||| |||||||||||    
T  38480269 tgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 38480368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 11066624 - 11066717
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| || | |||||  ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  11066624 gcaaggcagcaccattaaataatatgcagcaagtcaacaacaacaatgatcatccaatataactattacaacttcatatcaacatctttcacaa 11066717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 11085031 - 11085140
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-a 122  Q
    |||||||| ||| |||| | |||| |||||| ||| ||| | ||||| |||||||   | |||||||||||||||||||| | ||||| ||||||||| |    
T  11085031 tgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatagtttcacatttaatcatcaa 11085130  T
Q  123 agtaaatcat 132  Q
    ||||||||||    
T  11085131 agtaaatcat 11085140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 11092789 - 11092878
Alignment:
Q  45 aatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||| |||||| ||| ||| | ||||| |||||||   |||||||||||||||||||||| | ||||| ||||||||| |||||||||||    
T  11092789 aataatcatcatatataacaattacaatttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 11092878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 2940 - 3062
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||| ||||||| |||||| |||||||| |||||| |||||||||||||| | |||||||||||||   ||||||||||||||||||    
T  2940 gcaaggcaacaccatcatataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcaacatctttcacaatatata 3039  T
Q  101 aataatctcacattaatcatcaa 123  Q
    |||| ||||||||||||||||||    
T  3040 aatattctcacattaatcatcaa 3062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 3076 - 3136
Alignment:
Q  251 ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  3076 ttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaatcatcctctctg 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 27472522 - 27472391
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||||||||||||||    
T  27472522 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatata 27472423  T
Q  101 aataatctcacattaatcatc-aagtaaatca 131  Q
    |||| |||||||||||||||| ||||||||||    
T  27472422 aatattctcacattaatcatcaaagtaaatca 27472391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 1327251 - 1327117
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   |||| |||||||||||||    
T  1327251 gcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatcgttcacaatatata 1327152  T
Q  101 aataatctcacattaatcatc-aagtaaatcatat 134  Q
    |||| |||||||||||||||| |||||||||||||    
T  1327151 aatattctcacattaatcatcaaagtaaatcatat 1327117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 136 - 295
Target Start/End: Original strand, 39833869 - 39834029
Alignment:
Q  136 catcacaacagcaagacaa-catcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaact 234  Q
    ||||||| ||||||| ||| ||||||||||||||||||| | | ||||| |||||||||||||||||||||| | ||||||||| |||| |||||||||     
T  39833869 catcacatcagcaaggcaatcatcatttaaacatatacagcgagtaaccatcaataataatcttcatatata-accatttgcaacttcatatcaacaaca 39833967  T
Q  235 ttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatc 295  Q
    |||||  |||||| || ||||||||||||| ||||| ||||||| |||||||||||||||||    
T  39833968 ttcacgttatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatc 39834029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 21580063 - 21579887
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||||||||||| || ||| | ||| |||||||||||  ||  |||||||||| || ||| |||| ||||||      
T  21580063 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataattatc--atatataacaattacaacttcatatcaacgt 21579966  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| |  |||||| |||||||||| ||||||||||||    
T  21579965 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 21579887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 38550217 - 38550086
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||| ||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||||||||||||||    
T  38550217 gcaagacaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatatata 38550118  T
Q  101 aataatctcacattaatcatc-aagtaaatca 131  Q
    |||| |||||||||||||||| ||||||||||    
T  38550117 aatattctcacattaatcatcaaagtaaatca 38550086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 29763724 - 29763549
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||||||||||| |||||||||||||||| || ||| | ||| || ||||||||| ||  |||||||||| || ||| |||| ||||||      
T  29763724 attcatcacaacagcaagacatcatcatttaaacatatgcagcaa-tcaccatcgataataatcatc--atatataacaattacaacttcatatcaacgt 29763628  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| |  |||||| |||||||||| ||||||||||||    
T  29763627 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 29763549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 41680979 - 41680844
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||| ||||||| || ||||||||||||| || ||| | ||| |||||||||||| ||  |||||||||| || |||||| | ||||| |     
T  41680979 attcatcacaacaacaagacatcaccatttaaacatatgcagcaagtcaccatcaataataatcatc--atatataacaattacaatttgatatcaatat 41680882  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatca 269  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  41680881 ctttcacaatatataaatattttcacatttaatcatca 41680844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20982851 - 20982752
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||    |||||||||||||||||    
T  20982851 gcaaggcaacaccatcaaataatttacagcaaatcaacatcaacaataatcatctaatacaaccattacaacttcatatcaatatctttcacaatatata 20982752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 18760543 - 18760645
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| |||||||||| ||| | || ||||||||||   ||||||||||||||||||    
T  18760543 gcaaggcatcaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattataacttcatatcaacatctttcacaatatata 18760642  T
Q  101 aat 103  Q
    |||    
T  18760643 aat 18760645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 311
Target Start/End: Complemental strand, 42560332 - 42560208
Alignment:
Q  185 tcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaa 283  Q
    |||||||||||| |||||||||  ||| || |||||||| ||||||   ||||||||||||||||| ||||||||||||| |||||  |||||| | ||     
T  42560332 tcaataataatcatcatatata--acaattacaatttcatatcaacgtatttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcat 42560235  T
Q  284 tattaaatcatcttagtcatcctctctg 311  Q
    |||| |||||||||| ||||||||||||    
T  42560234 tatt-aatcatcttattcatcctctctg 42560208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 32807279 - 32807395
Alignment:
Q  152 caacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaactttcacaatatataaat- 250  Q
    ||||| |||||| |||||| || ||| | ||| |||||||||||| |||||||||  ||| || |||||||| ||||||  ||||||||||||||||||     
T  32807279 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatata--acaattacaatttcatatcaacgtctttcacaatatataaata 32807376  T
Q  251 ttttcacatttaaccatca 269  Q
    ||||||||||||| |||||    
T  32807377 ttttcacatttaatcatca 32807395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 42560371 - 42560238
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||| |||||||| ||||||| |||||||| ||| |||| | |||| |||||| ||| ||| | ||||| |||||||   | | ||||||||||||||    
T  42560371 gcaaggtaacaccattaaataatatgcagcaagtcaacatcaataataatcatcatatataacaattacaatttcatatcaacgtatttcacaatatata 42560272  T
Q  101 aataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||| | ||||| ||||||||| |||||||||||    
T  42560271 aatattttcacatttaatcatcaaagtaaatcat 42560238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 22965744 - 22965807
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatc 196  Q
    |||||||| ||||||||||||||| ||||||||||||| || ||| | ||| ||||||||||||    
T  22965744 attcatcataacagcaagacaacaccatttaaacatatgcatcaaatcaccatcaataataatc 22965807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 29763687 - 29763579
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-a 122  Q
    |||||||| ||| |||||| |||| |||||| ||| ||| | |||||||||||||   | |||||||||||||||||||| | ||||| ||||||||| |    
T  29763687 tgcagcaa-tcaccatcgataataatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 29763589  T
Q  123 agtaaatcat 132  Q
    ||||||||||    
T  29763588 agtaaatcat 29763579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 39936906 - 39936813
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||  |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  39936906 gcaaggcagcaccattaaataatatgcagcaagtcaacattaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 39936813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 18760615 - 18760706
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||| ||||  | ||||   |||||||| |||||||||| |||| |||||||    
T  18760615 ttcatatcaacatctttcacaatatataaatcttttcacatttaatcatctacttaaacccacaatatt-aatcatcttattcatactctctg 18760706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 3273234 - 3273310
Alignment:
Q  234 tttcacaatatataaatttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    ||||||||||||||||| |||||||||||| ||||| | |||||  | || ||| |||||||||| |||| |||||||    
T  3273234 tttcacaatatataaatctttcacatttaatcatcaacttaaatccataacatt-aatcatcttattcatactctctg 3273310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 21580026 - 21579917
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-a 122  Q
    |||||||| ||| |||| | |||| | |||| ||| ||| | |||||||||||||   | |||||||||||||||||||| | ||||| ||||||||| |    
T  21580026 tgcagcaagtcaccatcaataataattatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 21579927  T
Q  123 agtaaatcat 132  Q
    ||||||||||    
T  21579926 agtaaatcat 21579917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 310
Target Start/End: Complemental strand, 24865627 - 24865452
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||| |||||||||||||||||||||||||| || ||| | ||| |||||||||||| ||   ||||||||| || ||| |||| |||||||     
T  24865627 attcatcacaatagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatc--ttatataacaattacaacttcatatcaacat 24865530  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctct 310  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||||| |||||||||| |||||||||||    
T  24865529 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctct 24865452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 310
Target Start/End: Complemental strand, 7672409 - 7672240
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||||||||||| |||||||||||| ||| || ||| | ||| |||||||||||| || ||||||         ||| |||| ||||||      
T  7672409 attcatcacaacagcaagacagcatcatttaaacgtatgcatcaagtcaccatcaataataatcatcttatataa--------caacttcatatcaacgt 7672318  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctct 310  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||||| |||||||||| |||||||||||    
T  7672317 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctct 7672240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 298
Target Start/End: Original strand, 22500984 - 22501147
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||| | ||| |||||| ||||| ||   ||||||||| || ||| |||| ||||||      
T  22500984 attcatcacaatagcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatc--ttatataacaattacaacttcatatcaacgt 22501081  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    |||||||| ||||||||| ||||||||||||| |||||  |||||| | ||||||| ||||||||||    
T  22501082 ctttcacattatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 22501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 133 - 298
Target Start/End: Original strand, 22508918 - 22509081
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||| | ||| |||||| ||||| ||   ||||||||| || ||| |||| ||||||      
T  22508918 attcatcacaatagcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatc--ttatataacaattacaacttcatatcaacgt 22509015  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    |||||||| ||||||||| ||||||||||||| |||||  |||||| | ||||||| ||||||||||    
T  22509016 ctttcacattatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 22509081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 6576382 - 6576484
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| |||||||||| ||| | |||||||||||||   ||||||||||||||||||    
T  6576382 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacatctttcacaatatata 6576481  T
Q  101 aat 103  Q
    |||    
T  6576482 aat 6576484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 24883610 - 24883712
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataa 101  Q
    ||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   |||||||||||||||||||    
T  24883610 caaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaatatataa 24883709  T
Q  102 ata 104  Q
    |||    
T  24883710 ata 24883712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 2524519 - 2524410
Alignment:
Q  202 atatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagt 300  Q
    |||| ||||| || |||||| | ||||||  |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||||| |||||||||| |    
T  2524519 atatgtaacaattacaatttgatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttatt 2524421  T
Q  301 catcctctctg 311  Q
    ||| |||||||    
T  2524420 catactctctg 2524410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 24436267 - 24436320
Alignment:
Q  216 caatttcacatcaacaactttcacaatatataaatttttcacatttaaccatca 269  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||| |||||    
T  24436267 caatttcatatcaacatctttcacaatatataaatctttcacatttaatcatca 24436320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 24865548 - 24865481
Alignment:
Q  67 tacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||||||||||||   |||||||||||||||||||||| | ||||| ||||||||| |||||||||||    
T  24865548 tacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 24865481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5032220 - 5032142
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatat 79  Q
    ||||||||||| ||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | || ||||||||||    
T  5032220 gcaaggcaacaacattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattataacttcatat 5032142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 6576454 - 6576543
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaa-tttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctc 309  Q
    |||| ||||||| ||||||||||||||||| |||||||| ||||| ||||| | |||||  |||| ||| |||||||||| |||| |||||    
T  6576454 ttcatatcaacatctttcacaatatataaattttttcacttttaatcatcaacttaaatccacaacatt-aatcatcttattcatactctc 6576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24436200 - 24436301
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||| | ||||| |||  ||| | ||||| |||||||   ||||||||||||||||||    
T  24436200 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaaaa-tcatccaatgtaaccattacaatttcatatcaacatctttcacaatatata 24436298  T
Q  101 aat 103  Q
    |||    
T  24436299 aat 24436301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 24781735 - 24781658
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatat 79  Q
    ||||||| || ||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||    
T  24781735 caaggcagcatcattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatat 24781658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 8510 - 8350
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| |||||||||||||||| ||| ||| |||| |||||| |||||||||||||  | |||||||||||||   |||| ||||||||||||     
T  8510 gcaaggcaacaacatcaaataatttgcaacaagtcaacatcaacaataatcatcaaatacaatcattacaacttcatatcatcatcattcacaatatat- 8412  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||| |||||||    
T  8411 aatattctctcattaatcatcaaagtaaatcatattcatcacgacaacaagacagcatcatt 8350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 311
Target Start/End: Complemental strand, 6535 - 6359
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||| |||||||||||| ||||||||||||| || ||| | ||| |||||||||||| ||  |||||||||| || |||||||| ||||||      
T  6535 attcatcacaatagcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatc--atatataacaattacaatttcatatcaacgt 6438  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| |  | |||| |||||||||| ||||||||||||    
T  6437 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcattattatt-aatcatcttattcatcctctctg 6359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 6498 - 6389
Alignment:
Q  25 tgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcaca-ttaatcatc-a 122  Q
    |||||||| ||| |||| | |||| |||||| ||| ||| | ||||| |||||||   | |||||||||||||||||||| | ||||| ||||||||| |    
T  6498 tgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 6399  T
Q  123 agtaaatcat 132  Q
    ||||||||||    
T  6398 agtaaatcat 6389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 14335 - 14511
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||||||||||| || ||| | ||| |||||||||||| ||   ||||||||| || ||| |||| ||||||      
T  14335 attcatcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatc--ttatataacaattacaacttcatatcaacgt 14432  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||||||| ||||| ||| ||||||||||||| |||||  |||||| | ||||||| |||||||||| ||||||||||||    
T  14433 ctttcacattatatgaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctctg 14511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 1561 - 1736
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    ||||||||||||| |||||||||||||||||||||||| || ||| | ||| |||||||||||| ||   ||||||||| || ||| |||| ||||||      
T  1561 attcatcacaacaacaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatc--ttatataacaattacaacttcatatcaacgt 1658  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctct 310  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| | ||||||| |||||||||| | |||||||||    
T  1659 ctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattaatcctctct 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 11092 - 10961
Alignment:
Q  4 aggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaat 103  Q
    |||||||||||||||||||||| |||||| ||| |||| |||||| ||||| |||||||| | |||||||||||||   ||||||| |||||||||||||    
T  11092 aggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatcttttacaatatataaat 10993  T
Q  104 aatctcacattaatcatc-aagtaaatcatat 134  Q
    | |||||||| ||||||| |||||||||||||    
T  10992 attctcacataaatcatcaaagtaaatcatat 10961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2518 - 2327
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaat-atat 99  Q
    ||||||||||||||| ||||||  |||||||| ||| |||| |||||| || ||||||||||| | ||| |||||||||   ||||||||||||| ||||    
T  2518 gcaaggcaacaccattaaataaaatgcagcaagtcaacatcaacaataatcgtcaaatacaaccattacgacttcatataaacatctttcacaattatat 2419  T
Q  100 aaataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttc 199  Q
    || || ||        ||||  |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||    
T  2418 aagtattc--------atca--aagtcaatcatattcatcacgacagcaagacagcatcatttaaacatatacaacaagtaaccatcattaataatcttc 2329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 362900 - 363033
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||||||||||||| |||||| |||||| ||| |||| |||||| ||||| |||||||  | |||||||||||||   ||||||||| ||||||||    
T  362900 gcaaggcaacaccatcaattaatttacagcaagtcaacatcaacaataatcatctaatacaatcattacaacttcatatcaacatctttcaaaatatata 362999  T
Q  101 aataatctcacattaatcatc-aagtaaatcata 133  Q
    |||| |||||||||||||||| ||||||||||||    
T  363000 aatattctcacattaatcatcaaagtaaatcata 363033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 24870 - 24726
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||||||||||| |||||| ||| |||| |||||| |||||||||||||  | |||||||||||||   |||| | ||||||||||     
T  24870 gcaaggcaacaacatcaaataatttacagcaagtcaacatcaacaataatcatcaaatacaatcattacaacttcatatcatcatcatccacaatatat- 24772  T
Q  101 aataatctcacattaatcatc-aagtaaatcatattcatcacaaca 145  Q
    |||| |||| || |||||||| ||||||||||||||||||||||||    
T  24771 aatattctctcaataatcatcaaagtaaatcatattcatcacaaca 24726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 36261 - 36140
Alignment:
Q  14 atcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataatctcacat 113  Q
    |||||||||||| |||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   |||||||||||||||||||||| ||||||||    
T  36261 atcaaataatttacagcaagtcaacatcaacaataatcatctaatataaccattacaacttcatatcaacatctttcacaatatataaatattctcacat 36162  T
Q  114 taatcatc-aagtaaatcatat 134  Q
    |||||||| |||||||||||||    
T  36161 taatcatcaaagtaaatcatat 36140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 479 - 608
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||||||||||||||||||||||||| ||||||| || ||| | ||| |||||||||||| ||  |||||||||| ||  ||||||| ||||||      
T  479 attcatcacaacagcaagacaacatcattttaacatatgcagcaagtcaccatcaataataatcatc--atatataacaattataatttcatatcaacgt 576  T
Q  233 ctttcacaatatataaat-ttttcacatttaa 263  Q
    |||||||||||||||||| ||||| |||||||    
T  577 ctttcacaatatataaatattttctcatttaa 608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 298
Target Start/End: Original strand, 10890 - 11053
Alignment:
Q  133 attcatcacaacagcaagacaacatcatttaaacatatacaacaactaaccttcaataataatcttcatatatataacatttgcaatttcacatcaacaa 232  Q
    |||||||| ||||||||||||||||||||||||||||| || ||| | ||  |||||||||||| ||  |||||||||| ||  || |||| ||||||      
T  10890 attcatcaaaacagcaagacaacatcatttaaacatatgcagcaagtcacaatcaataataatcatc--atatataacaattaaaaattcatatcaacgt 10987  T
Q  233 ctttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||| | ||| ||| ||||||||||    
T  10988 ctttcacaatatataaatattttcacatttaatcatcatagtaaatcatcaacatt-aatcatctta 11053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 18546 - 18393
Alignment:
Q  7 caacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaataat 106  Q
    ||||| |||||||||||||||| ||| ||| |||| |||||| ||||||||||||   | |||||||||||||   |||| |||||||| | ||| ||      
T  18546 caacaacatcaaataatttgcaacaagtcaacatcaacaataatcatcaaatacattcattacaacttcatatcatcatcattcacaatgtgtaa-tatc 18448  T
Q  107 ctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    ||| |||||||||||||||||| ||||||| |||||||| ||| |||||||||||    
T  18447 ctctcattaatcatcaagtaaaccatattcctcacaacaacaaaacaacatcatt 18393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 4677 - 4786
Alignment:
Q  202 atatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagt 300  Q
    |||||||||| || |||||||| ||||||  |||||||||||||||||| ||||||||||||| |||||  |||||| | || |||| |||||||||| |    
T  4677 atatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcattatt-aatcatcttatt 4775  T
Q  301 catcctctctg 311  Q
    |||||||||||    
T  4776 catcctctctg 4786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 259 - 368
Alignment:
Q  202 atatataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagt 300  Q
    |||||||||| || |||||||| ||||||  |||||||||||||||||| ||||||||| ||| |||||  |||||| | || |||| |||||||||| |    
T  259 atatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatataatcatcaaagtaaatcatcattatt-aatcatcttatt 357  T
Q  301 catcctctctg 311  Q
    |||||||||||    
T  358 catcctctctg 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 205 - 338
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||| |||| ||| ||| |||| | |||| | |||| ||| ||| | ||||| |||||||   | ||||||||||||||||    
T  205 gcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcacaatatata 304  T
Q  101 aataatctcacat-taatcatc-aagtaaatcat 132  Q
    |||| | |||||| |||||||| |||||||||||    
T  305 aatattttcacatataatcatcaaagtaaatcat 338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4623 - 4756
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||||||| |||| ||| ||| |||| | |||| | |||| ||| ||| | ||||| |||||||   | ||||||||||||||||    
T  4623 gcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcacaatatata 4722  T
Q  101 aataatctcaca-ttaatcatc-aagtaaatcat 132  Q
    |||| | ||||| ||||||||| |||||||||||    
T  4723 aatattttcacatttaatcatcaaagtaaatcat 4756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 7865 - 7720
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatac-aacttcatattcgcatctttcacaatatat 99  Q
    ||||||||||| ||||||||||||  |||||| ||| | || |||||| |||||||||||||  | ||| ||||||||||   |||| | ||||||||||    
T  7865 gcaaggcaacaacatcaaataattcacagcaagtcaacgtcaacaataatcatcaaatacaatcattacaaacttcatatcatcatcatccacaatatat 7766  T
Q  100 aaataatctcacattaatcatc-aagtaaatcatattcatcacaaca 145  Q
     |||| |||| || |||||||| ||||||||||||||||||||||||    
T  7765 -aatattctctcaataatcatcaaagtaaatcatattcatcacaaca 7720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 59449 - 59347
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||||||| ||| ||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||||||||    
T  59449 gcaaggcaacaccattaaaaaatatgcagcaagtcaacatcaacaataatcatccaatataacaattacaacttcatatcaacatctttcacaatatata 59350  T
Q  101 aat 103  Q
    |||    
T  59349 aat 59347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 59393 - 59295
Alignment:
Q  204 atataacatttgcaatttcacatcaacaactttcacaatatataaatttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcat 303  Q
    |||||||| || ||| |||| ||||||| |||||||||||||||||| |||||||||||| ||||| | |||||  |||| ||| |||||||||| ||||    
T  59393 atataacaattacaacttcatatcaacatctttcacaatatataaatctttcacatttaatcatcaacttaaatccacaacatt-aatcatcttattcat 59295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 13469 - 13627
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    ||||||||||| ||||| |||||||||| ||| ||| |||| |||||| ||||||||||||   | |||||||||||||   |||| |||||| ||| |     
T  13469 gcaaggcaacaacatcatataatttgcaacaagtcaacatcaacaataatcatcaaatacattcattacaacttcatatcatcatcattcacactatgt- 13567  T
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||||| | || |||||||||||||| | ||  |||||||||||    
T  13568 aatattctctcattaatcatcaact-aaccatattcatcacaataacagaacaacatcatt 13627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 12924 - 12864
Alignment:
Q  101 aataatctcacattaatcatcaagtaaatcatattcatcacaacagcaagacaacatcatt 161  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  12924 aatattctctcattaatcatcaagtaaatcatattcatcacaacaacaaaacaacatcatt 12864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 76898 - 77000
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| |||||| ||||||| || ||||| |||  ||| |||||| ||||| |||| ||| | ||||||||||||| | ||||||||||||||||||    
T  76898 gcaaggcagcaccattaaataatatgtagcaaatcaaaatcaacaataatcatccaatataaccattacaacttcatatccacatctttcacaatatata 76997  T
Q  101 aat 103  Q
    |||    
T  76998 aat 77000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0679 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 2567 - 2471
Alignment:
Q  7 caacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaat 103  Q
    |||||| || ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | ||||||||| |||  ||||||||||||||||||||||    
T  2567 caacactattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcttatgagcatctttcacaatatataaat 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 6901 - 6770
Alignment:
Q  3 aaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataaa 102  Q
    |||||| |||||| ||||||| |||||||| ||| |||  |||||| |||||||||| ||  | ||||||| |||||   | ||||||||||||||||||    
T  6901 aaggcagcaccattaaataatatgcagcaagtcaacatgaacaataatcatcaaatataatcattacaactccatatcaacgtctttcacaatatataaa 6802  T
Q  103 taatctcaca-ttaatcatc-aagtaaatcat 132  Q
    || | ||||| ||||||||| |||||||||||    
T  6801 tattttcacatttaatcatcaaagtaaatcat 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 9960 - 9906
Alignment:
Q  90 cacaatatataaataatctcacattaatcatcaagtaaatcatattcatcacaaca 145  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  9960 cacaatatataa-tattctctcattaatcatcaagtaaatcatattcatcacaaca 9906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 3073 - 3174
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatataa 101  Q
    |||||||||| ||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||| |||||| ||||||||    
T  3073 caaggcaacaacattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatttttcacgatatataa 3172  T
Q  102 at 103  Q
    ||    
T  3173 at 3174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 3144 - 3234
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaatttttcacatttaaccatcaccgtaaataaacaatattaaatcatcttagtcatcctctctg 311  Q
    |||| |||||||  |||||| |||||||||| |||||||||||| ||||| | |||||  |||| ||| |||||||||| |||| |||||||    
T  3144 ttcatatcaacatttttcacgatatataaatctttcacatttaatcatcaacttaaatccacaacatt-aatcatcttattcatactctctg 3234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 10122 - 10029
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  10122 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 10029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 9197 - 9106
Alignment:
Q  2 caaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcaca 93  Q
    ||||||| |||||| ||||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   |||||||||||    
T  9197 caaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcaca 9106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 15515 - 15421
Alignment:
Q  204 atataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    |||||||| | |||| |||| |||||||  ||||||||||||||||| ||||||||||||| ||||| | ||||| ||||| ||| ||||||||||    
T  15515 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatcaacaacatt-aatcatctta 15421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 24573 - 24479
Alignment:
Q  204 atataacatttgcaatttcacatcaacaactttcacaatatataaat-ttttcacatttaaccatcaccgtaaataaacaatattaaatcatctta 298  Q
    |||||||| | |||| |||| |||||||  ||||||||||||||||| ||||||||||||| ||||| | ||||| ||||| ||| ||||||||||    
T  24573 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatcaacaacatt-aatcatctta 24479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 3104 - 3153
Alignment:
Q  90 cacaatatataaataatctcacattaatcatcaagtaaatcatattcatca 140  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  3104 cacaatatataa-tattctctcattaatcatcaagtaaatcatattcatca 3153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5600 - 5498
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatata 100  Q
    |||||||| |||||| ||||||| |||||||| | | |||| |||||| ||||| |||| ||  | |||||||||||||   || |||||||||||||||    
T  5600 gcaaggcagcaccattaaataatatgcagcaagttaacatcaacaataatcatccaatataaacattacaacttcatatcaacacctttcacaatatata 5501  T
Q  101 aat 103  Q
    |||    
T  5500 aat 5498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 5528 - 5479
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaatttttcacatttaaccatca 269  Q
    |||| ||||||| |||||||||||||||||| |||||||||||| |||||    
T  5528 ttcatatcaacacctttcacaatatataaatctttcacatttaatcatca 5479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 813 - 911
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaatatat 99  Q
    |||||||| ||| || | ||||| |||||||| ||| |||| |||||| ||||| |||| ||| | |||||||||||||   |||||||||||||||||    
T  813 gcaaggcagcacgattagataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaatatat 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 885 - 934
Alignment:
Q  220 ttcacatcaacaactttcacaatatataaatttttcacatttaaccatca 269  Q
    |||| ||||||| |||||||||||||| ||| |||||||||||| |||||    
T  885 ttcatatcaacatctttcacaatatattaatctttcacatttaatcatca 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 9851 - 9908
Alignment:
Q  88 ttcacaatatataaataatctcacattaatcatcaa-gtaaatcatattcatcacaaca 145  Q
    |||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||    
T  9851 ttcacaatatataa-tattctctcattaatcatcaaagtaaatcatattcatcacaaca 9908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8282 - 8189
Alignment:
Q  1 gcaaggcaacaccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||||| |||||| ||||||| |||||||| ||| |||| |||| | ||||| |||| ||| | |||||||||||||   ||||||||||||    
T  8282 gcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaacaatcatccaatataaccattacaacttcatatcaacatctttcacaa 8189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 9645 - 9561
Alignment:
Q  10 caccatcaaataatttgcagcaactcatcatcgacaatagtcatcaaatacaacgaatacaacttcatattcgcatctttcacaa 94  Q
    |||||| ||||||| |||||||| ||| |||| ||  || ||||| |||| ||| | ||||||||||||||  ||||||||||||    
T  9645 caccattaaataatatgcagcaagtcaacatcaacggtaatcatccaatataaccattacaacttcatattaacatctttcacaa 9561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University