View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21692_high_2 (Length: 454)
Name: NF21692_high_2
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21692_high_2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 5 - 454
Target Start/End: Complemental strand, 4862435 - 4861986
Alignment:
| Q |
5 |
gagtagcagagatgattacgggtctcaaacaagcaaggtaagcaccatttcagctagtacagaagaccagcatctacttaatgctacggtgttttctgag |
104 |
Q |
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| T |
4862435 |
gagtagcagtgatgattacgggtctcaaacaagcaaggtaagcaccatttcagctagtacagaagatcagcatctactttatgctacggtgttttctgag |
4862336 |
T |
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| Q |
105 |
atcgggaatccaagagcaagatagatagttgtcactcatcttaaaattttgaaatgtatgttttataaagattactatagtgtgtaatttaatcgtttat |
204 |
Q |
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| T |
4862335 |
atcgggaatccaagagcaagatagatagttgtcactcatcctaaaattttgaaatgtatgttttataaagattactatagtgtgtaatttaatcgtttat |
4862236 |
T |
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| Q |
205 |
aatttgttgacgttgtacacatgatggattgaagatatgttccaggaaaaactccagtctcaaattttaaagtgataatgtctaatattagtttgtaaga |
304 |
Q |
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| T |
4862235 |
aatttgttgacgttgcacacatgatgcattgaagatatgttccaggaaaaactccagtctcaaattttaaagtgataatgtctaatattagtttgtaaga |
4862136 |
T |
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| Q |
305 |
atcaatttataaaatcttaacaataagaagaacgtatcaaatttagtaccatatcaaatcaagccacagttagccaaatgagtgtgatttagttggtttt |
404 |
Q |
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| T |
4862135 |
atcaatttataaaatcttaacaataagaagaacgtatcaaatctagtaccatatcaaatcaagccacagttagccaaatgagtgtgatttagatggtttt |
4862036 |
T |
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| Q |
405 |
aatgaccacatttatggaatcgtacaacacatttattgaaatgcaaaaac |
454 |
Q |
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| T |
4862035 |
aatgaccacatttatggaatcgtacaacacatttattgaaatgcaaaaac |
4861986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 4698761 - 4698925
Alignment:
| Q |
6 |
agtagcagagatgattacgggtctcaaacaagcaaggtaagcaccatttcagctagtacagaagaccagcatctacttaatgctacggtgttttctgaga |
105 |
Q |
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| T |
4698761 |
agtagcagtgatgattatgagactcaaacaagcaaagtaagcaccaattcagccagcactgaagatcaacctttgttttctgcaacggtgttttctgaga |
4698860 |
T |
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| Q |
106 |
tcgggaatccaagagcaagatagatagttgtcactcatcttaaaattttgaaatgtatgttttat |
170 |
Q |
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| T |
4698861 |
ttgggaatccaagagcacgatagataattctcactcattctaaaatttccaaatgtatattttat |
4698925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 4817911 - 4817996
Alignment:
| Q |
85 |
atgctacggtgttttctgagatcgggaatccaagagcaagatagatagttgtcactcatcttaaaattttgaaatgtatgttttat |
170 |
Q |
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| T |
4817911 |
atgctacggtgttttctgagattggaaatccaaaagcacgatagatatttgccactatttctaaaattttcgaatgtatattttat |
4817996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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