View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21692_high_20 (Length: 316)

Name: NF21692_high_20
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21692_high_20
NF21692_high_20
[»] chr7 (12 HSPs)
chr7 (23-169)||(2335577-2335723)
chr7 (151-312)||(2335349-2335501)
chr7 (212-300)||(1540543-1540631)
chr7 (219-312)||(1556595-1556688)
chr7 (211-312)||(1563843-1563944)
chr7 (210-313)||(1605256-1605359)
chr7 (239-312)||(2322189-2322262)
chr7 (244-312)||(1597283-1597351)
chr7 (241-312)||(1089530-1089601)
chr7 (228-312)||(2326479-2326563)
chr7 (210-313)||(1106869-1106972)
chr7 (239-312)||(3954367-3954440)
[»] scaffold0491 (1 HSPs)
scaffold0491 (219-307)||(5202-5290)
[»] chr8 (3 HSPs)
chr8 (207-307)||(18738419-18738518)
chr8 (207-307)||(18743383-18743482)
chr8 (219-307)||(18748361-18748449)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 2335723 - 2335577
Alignment:
Q  23 tggtacatgctggaccaaaagaagtaagattctttccacacgctatggccaaacttacattagaaatcttgatatttcctacgatttccgagaaaaacag 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335723 tggtacatgctggaccaaaagaagtaagattctttccacacgctattgccaaacttacattagaaatcttgatatttcctacgatttccgagaaaaacag 2335624  T
Q  123 ttatctctaaaatgcaatgattttcaaagaaaaattcctacgaaaaa 169  Q
     |||||||||||| |||||||||||||||| ||||||||||||||||    
T  2335623 gtatctctaaaatacaatgattttcaaagacaaattcctacgaaaaa 2335577  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 151 - 312
Target Start/End: Complemental strand, 2335501 - 2335349
Alignment:
Q  151 gaaaaattcctacgaaaaaacctattagaatggataaactaaatattaattcaagcttctgaagtgtttcttgcaagggttcccaacgtgaaataatgct 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  2335501 gaaaaattcctaagaaaaaacctattagaatggataaactaaatattaattcaagcttctgaagtgtttcttgcaagg---------gtgaaataatgct 2335411  T
Q  251 tttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335410 tttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 2335349  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 1540543 - 1540631
Alignment:
Q  212 aagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaat 300  Q
    |||| |||||| |||| ||||||||  | |||||||||||| ||||||||||| |||||||||| || |||||| ||||||||||||||    
T  1540543 aagtatttctttcaagagttcccaatataaaataatgctttgagttcttcactcattagttgctccactgaaatttcactcaaaggaat 1540631  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 1556595 - 1556688
Alignment:
Q  219 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 312  Q
    |||| ||||||||| |||  | ||||||||| || ||||||||||| |||||||| | || |||||| |||||||||||||| |||||||||||    
T  1556595 tctttcaagggttctcaatataaaataatgcattgagttcttcactcattagttgttgcactgaaatttcactcaaaggaatgcttaatggtgt 1556688  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 1563843 - 1563944
Alignment:
Q  211 gaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggt 310  Q
    ||||| |||||| |||||| ||||||  | |||||||||||  ||||||||||| |||||||||| || |||||| |||||||||||||  ||||| |||    
T  1563843 gaagtttttctttcaaggggtcccaatataaaataatgcttcgagttcttcactcattagttgctgcactgaaatttcactcaaaggaaggcttaacggt 1563942  T
Q  311 gt 312  Q
    ||    
T  1563943 gt 1563944  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 1605359 - 1605256
Alignment:
Q  210 tgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatgg 309  Q
    |||||| |||||| || ||||||||||  | ||||||| |||| ||||||| ||| || ||||| | || |||||| |||||||||||||| ||||||||    
T  1605359 tgaagtttttctttcaggggttcccaatataaaataatcctttcagttcttgactcatgagttgttgcactgaaatttcactcaaaggaatgcttaatgg 1605260  T
Q  310 tgtg 313  Q
    ||||    
T  1605259 tgtg 1605256  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 2322262 - 2322189
Alignment:
Q  239 tgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 312  Q
    |||||||||||||||| ||||| ||| || ||||||| ||  ||||| |||||||||||||| |||||||||||    
T  2322262 tgaaataatgcttttaattcttgactcatcagttgctgcacagaaatttcactcaaaggaatgcttaatggtgt 2322189  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 1597351 - 1597283
Alignment:
Q  244 taatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 312  Q
    ||||||| | ||||||||||| |||||||||| ||  ||||| |||||||||||||| |||||||||||    
T  1597351 taatgctctgagttcttcactcattagttgctgcacggaaatttcactcaaaggaatgcttaatggtgt 1597283  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 1089601 - 1089530
Alignment:
Q  241 aaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 312  Q
    |||||||||||| ||||||| ||| |  ||||||| ||||||||| |||||||||||| | |||||||||||    
T  1089601 aaataatgctttgagttcttgactcaagagttgctgcattgaaatttcactcaaaggagttcttaatggtgt 1089530  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 2326563 - 2326479
Alignment:
Q  228 ggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 312  Q
    ||||||| || |||||||||  ||||||||||| ||| || ||||||| || |||||| |||||| || |||||||| |||||||    
T  2326563 ggttcccgacatgaaataatatttttagttcttgactcatgagttgctgcactgaaatttcactcgaaagaatacttgatggtgt 2326479  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 1106972 - 1106869
Alignment:
Q  210 tgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatgg 309  Q
    |||||| |||||| || ||||||||||  | ||||||| |||| ||||||| ||   | ||||| | || |||||| |||||||||||||| ||||||||    
T  1106972 tgaagtttttctttcaggggttcccaatataaaataatcctttcagttcttgacccgtgagttgttgcactgaaatttcactcaaaggaatgcttaatgg 1106873  T
Q  310 tgtg 313  Q
    ||||    
T  1106872 tgtg 1106869  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 3954367 - 3954440
Alignment:
Q  239 tgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 312  Q
    |||||||||||||| ||||||| | | |  ||||||| || |||||| || ||||||||||| |||||||||||    
T  3954367 tgaaataatgctttgagttcttgattcacgagttgcttcactgaaatttctctcaaaggaatgcttaatggtgt 3954440  T

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Target: scaffold0491 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 5202 - 5290
Alignment:
Q  219 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaat 307  Q
    |||| ||||||||| |||  | ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| |||||||||||||||    
T  5202 tctttcaagggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaat 5290  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 18738419 - 18738518
Alignment:
Q  207 ttctgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaa 306  Q
    ||||||||| |||||| ||||||||| |||    ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| ||||||||||||||    
T  18738419 ttctgaagt-tttctttcaagggttcgcaatacaaaacaatgctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaa 18738517  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 18743383 - 18743482
Alignment:
Q  207 ttctgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaa 306  Q
    ||||||||| |||||| ||||||||| |||    ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| ||||||||||||||    
T  18743383 ttctgaagt-tttctttcaagggttcgcaatacaaaacaatgctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaa 18743481  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 18748361 - 18748449
Alignment:
Q  219 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaat 307  Q
    |||| ||||||||| |||  | ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| |||||||||||||||    
T  18748361 tctttcaagggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaat 18748449  T

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