View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21692_high_22 (Length: 314)

Name: NF21692_high_22

Description: NF21692

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21692_high_22

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 207; E-Value: 1e-113

Query Start/End: Original strand, 18 - 314

Target Start/End: Original strand, 45359432 - 45359718

Alignment:

Q	18	gtaaaataaataaacagcaactcctcagatgccccaaagttaaacccctagactttattcccaatcaacaaacaaaaatgagaacaatgaaaatacaaac	117	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45359432	gtaaaataaatgaacagcaactcctcagatgccccaaagttaaacccctagactttattcccaatcaacaaa----aatgagaacaatgaaaatacaaac	45359527	T

Q	118	agtaatcagaaggcaaaagaacaagcatcacaaatattnnnnnnnnnnnnnnnnnnnntcaatttccaataaataaatttaacattgctctaaattagaa	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45359528	agtaatcagaaggcaaaagaacaagcatctcaaatattaaaaaaaaaaaaaa------tcaatttccaataaataaatttaacattgctctaaattagaa	45359621	T

Q	218	ggcaataataatgtttacatgcaggtgcaaaacaaactattcaacatgaaaaataaaatgacaaatctgtaataaagaggagcgggttacatctaaa	314	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45359622	ggcaataataatgtttacatgcaggtgcaaaacaaactattcaacatgaaaaataaaatgacaaatctgtaataaagaggagcgggttacatctaaa	45359718	T

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