View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21692_high_3 (Length: 422)
Name: NF21692_high_3
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21692_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 35 - 399
Target Start/End: Original strand, 29981615 - 29981979
Alignment:
| Q |
35 |
cattcattacgcgaaacgagtgtcctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtg |
134 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981615 |
cattcattacgcgaaacgagtgccctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtg |
29981714 |
T |
|
| Q |
135 |
tgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgca |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981715 |
tgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgca |
29981814 |
T |
|
| Q |
235 |
attaccatttggtctttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctg |
334 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981815 |
attaccatttggtctttgttgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctg |
29981914 |
T |
|
| Q |
335 |
agagttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctcttgatgat |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981915 |
agagttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctcttgatgat |
29981979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 165 - 387
Target Start/End: Complemental strand, 8156284 - 8156063
Alignment:
| Q |
165 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
264 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8156284 |
attgagagatgaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgt |
8156185 |
T |
|
| Q |
265 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
364 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8156184 |
tttttgttcc-aaagggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
8156086 |
T |
|
| Q |
365 |
ataactttcctcgctttcgtgtt |
387 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
8156085 |
ataactttgctcgctttcgtgtt |
8156063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 391
Target Start/End: Complemental strand, 51405083 - 51404730
Alignment:
| Q |
35 |
cattcattacgcgaaacgagtgtcctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtg |
134 |
Q |
| |
|
|||||||||| |||| || ||||||||||| ||||| |||||||| | || |||||||| || || ||||| || || |||| | |||||||| || |
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|
| T |
51405083 |
cattcattacatgaaatgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatcgaggcacgcttttgatg |
51404984 |
T |
|
| Q |
135 |
tgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgca |
234 |
Q |
| |
|
||||| | |||||| |||||||| ||||| |||||| ||||| |||||||| ||||||||||||||| | || | |||||| | ||| || || |
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|
| T |
51404983 |
agcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcg |
51404884 |
T |
|
| Q |
235 |
attaccatttggtctttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctg |
334 |
Q |
| |
|
|| |||||||| |||| |||| |||||||||||||||||| |||| ||||| || | ||| || |||||||| | || ||||||| |||||||| |
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| T |
51404883 |
ataaccatttgatcttca---tcattttgttttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctg |
51404787 |
T |
|
| Q |
335 |
agagttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctc |
391 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | ||||||||||||| ||||||| |
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|
| T |
51404786 |
agagttccatcaagtgcattgcatagatacagagtcttcctcgctttcgggttcctc |
51404730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 165 - 399
Target Start/End: Complemental strand, 7675006 - 7674772
Alignment:
| Q |
165 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
264 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
7675006 |
attgagagatgaaattgttgtcataggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
7674907 |
T |
|
| Q |
265 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
364 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7674906 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattgcatatatac |
7674807 |
T |
|
| Q |
365 |
ataactttcctcgctttcgtgttcctcttgatgat |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
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|
| T |
7674806 |
acaactttcctcgctttcgtgttcctcttgatgat |
7674772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 165 - 399
Target Start/End: Original strand, 36613439 - 36613673
Alignment:
| Q |
165 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
264 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
36613439 |
attgagagatgaaattgttgtcacaggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgt |
36613538 |
T |
|
| Q |
265 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
364 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36613539 |
tttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
36613638 |
T |
|
| Q |
365 |
ataactttcctcgctttcgtgttcctcttgatgat |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36613639 |
acaactttcctcgctttcgtgttcctcttgatgat |
36613673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 165 - 399
Target Start/End: Original strand, 25523662 - 25523896
Alignment:
| Q |
165 |
attgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgt |
264 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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|
| T |
25523662 |
attgagagatgaaattgttgtcataggacgaacaatgacactacttaaatgtccataagcttcaaatgcaattaccatttggtcttttttgtcatgttgt |
25523761 |
T |
|
| Q |
265 |
tttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatatac |
364 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
25523762 |
tttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattgcatatatac |
25523861 |
T |
|
| Q |
365 |
ataactttcctcgctttcgtgttcctcttgatgat |
399 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
25523862 |
acaactttccttgctttcgtgttcctcttgatgat |
25523896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 399
Target Start/End: Complemental strand, 47370132 - 47370102
Alignment:
| Q |
369 |
ctttcctcgctttcgtgttcctcttgatgat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47370132 |
ctttcctcgctttcgtgttcctcttgatgat |
47370102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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