View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21692_high_32 (Length: 300)
Name: NF21692_high_32
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21692_high_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 7560257 - 7559963
Alignment:
| Q |
9 |
agcagagataaaaagtaaacactatcaattcagtagttttaacaatatactaaacactgcatccgacggagtaaacaaattcaaatatagttcaagacat |
108 |
Q |
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| T |
7560257 |
agcagagataaaaagtaaacactatcaattcagtagttttaacaatatagtaaacactgcatccgacggagtaaacaaattcaaatatatttcaagacat |
7560158 |
T |
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| Q |
109 |
ctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaatcaaatgaa |
205 |
Q |
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| T |
7560157 |
ctgttttgaagaatgtaaggttttcagaagctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaatcaaatgaa |
7560058 |
T |
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| Q |
206 |
tcacaatacttctatgaaaaacataacatcgatgttaatttcacttataagataaagtaaattatatctaactattaaggaatgatgaaaaattg |
300 |
Q |
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| T |
7560057 |
tcacaatacttctatgaaaaacataacatcgatgttaatttcacttataagataaagtaaattatatctaactattaaggaatgatgaaaaattg |
7559963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 1739817 - 1739704
Alignment:
| Q |
101 |
caagacatctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacatataaat |
197 |
Q |
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| T |
1739817 |
caagatatctgctttgaagagtgtaaggttctcagaagctttttccagtttcagcaagtgttcatatttcggactacctgcagttgtcagacatacactt |
1739718 |
T |
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| Q |
198 |
caaatgaatcacaa |
211 |
Q |
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| T |
1739717 |
caaatgaatcacaa |
1739704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 2010471 - 2010565
Alignment:
| Q |
101 |
caagacatctgttttgaagaatgtaaggttttcag---ctctctcaaatttcagcaagtgttcatatttccgattacctgcagtggtcagacata |
192 |
Q |
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| T |
2010471 |
caagatatctgctttgaagagtgtaaggttctcagaagctttttccagtttcagcaagtgttcatattttggactacctgcagttgtcagacata |
2010565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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