View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21692_high_4 (Length: 407)

Name: NF21692_high_4
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21692_high_4
NF21692_high_4
[»] chr4 (11 HSPs)
chr4 (1-397)||(7615597-7615992)
chr4 (1-396)||(7606584-7606996)
chr4 (1-217)||(7637612-7637827)
chr4 (1-217)||(7629166-7629381)
chr4 (233-397)||(7637414-7637578)
chr4 (1-216)||(7655499-7655710)
chr4 (241-397)||(7628968-7629124)
chr4 (236-390)||(7655748-7655902)
chr4 (13-122)||(39098306-39098415)
chr4 (349-388)||(39098047-39098086)
chr4 (335-391)||(7633703-7633759)
[»] chr7 (6 HSPs)
chr7 (1-397)||(8935460-8935873)
chr7 (1-185)||(8910525-8910709)
chr7 (1-157)||(8934519-8934675)
chr7 (1-148)||(8930064-8930211)
chr7 (233-382)||(8910770-8910919)
chr7 (335-391)||(8918868-8918924)
[»] chr8 (1 HSPs)
chr8 (97-216)||(15190642-15190757)
[»] chr6 (2 HSPs)
chr6 (92-187)||(6501085-6501176)
chr6 (94-122)||(11969547-11969575)
[»] chr3 (2 HSPs)
chr3 (98-213)||(8103025-8103139)
chr3 (76-216)||(40146823-40146959)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 7615992 - 7615597
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615992 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 7615893  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7615892 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacag-c 7615794  T
Q  201 ccatacgatttcctttcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615793 ccatacgatttcctttcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaaga 7615694  T
Q  301 gaacattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 397  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7615693 gaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagtgcttttaactcacctttggtgctctgtg 7615597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 7606996 - 7606584
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  7606996 aaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatt 7606897  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    ||||||||||||||||||||||||||||  ||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||   |    
T  7606896 tcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaac-ttc 7606798  T
Q  201 ccatacgatttcctttc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggat 282  Q
    |||||||||||||||||                    | || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  7606797 ccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaactttgtttatcaaataggtt 7606698  T
Q  283 atttcatttcacaaaagagaacattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcac 382  Q
    ||||||||||||||| ||||| ||  ||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  7606697 atttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcac 7606598  T
Q  383 ctttggtgctctgt 396  Q
    ||||||||||||||    
T  7606597 ctttggtgctctgt 7606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7637827 - 7637612
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  7637827 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 7637728  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  7637727 tcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac-ggc 7637629  T
Q  201 ccatacgatttcctttc 217  Q
    | |||||||||||||||    
T  7637628 ctatacgatttcctttc 7637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7629381 - 7629166
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| ||||||||| |||| ||||||||||    
T  7629381 aaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatt 7629282  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||   || |||||||||||||||||| ||||||   |    
T  7629281 tcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaac-ttc 7629183  T
Q  201 ccatacgatttcctttc 217  Q
    |||||||||||||||||    
T  7629182 ccatacgatttcctttc 7629166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 233 - 397
Target Start/End: Complemental strand, 7637578 - 7637414
Alignment:
Q  233 ttgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaacattgtacaactaaaatcgaaaatcaatg 332  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||||| |||||||||||||||| ||||| ||  ||||| | |||||||||||||| |    
T  7637578 ttgagtttttcatcgtttaatgaggaaaaatattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacg 7637479  T
Q  333 atgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 397  Q
    | ||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  7637478 aagagatcggcaccaccaaaatatcttctctacaagcacttttaactcacgtttggtgctatgtg 7637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 7655499 - 7655710
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |     ||||||||||| || | ||||||| ||||   ||||||||    
T  7655499 aaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacggacagtccacgtggcatt 7655598  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||| ||||||||||| |||||| ||||   ||||||||||||||||||  ||||||| || ||||||||||||||||||||  |||||| | |    
T  7655599 tcatcaattcgtgggctgaaatgtcacgtggttg---tcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaac-gac 7655694  T
Q  201 ccatacgatttccttt 216  Q
    | ||||||||||||||    
T  7655695 ctatacgatttccttt 7655710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 397
Target Start/End: Complemental strand, 7629124 - 7628968
Alignment:
Q  241 ttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaacattgtacaactaaaatcgaaaatcaatgatgagatt 340  Q
    |||||| |||||||| |||||||||||||||||||||||  |||| || || ||||| ||||| || || ||||| ||||| ||||||||  | ||||||    
T  7629124 ttcgtcatctaatgatgaaaaactttgtttatcaaatagattattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagatt 7629025  T
Q  341 ggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 397  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  7629024 ggtaacatcaaaatatcttctctacaagcgcttctaactcatgtttggtgctatgtg 7628968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 236 - 390
Target Start/End: Original strand, 7655748 - 7655902
Alignment:
Q  236 agtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaacattgtacaactaaaatcgaaaatcaatgatg 335  Q
    ||||||||||| ||| |||| |||||||| | | ||||| | ||||||||||| || |||||  |||| ||  | ||||| ||||||||| ||||||  |    
T  7655748 agtttttcgtcttctgatgacgaaaaactctttctatcagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcag 7655847  T
Q  336 agattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtg 390  Q
    |||||| |||||  |||||||||||||||||||||||||||||||| ||||||||    
T  7655848 agattgataccaaaaaaatatcttctctacaagcgcttttaactcatctttggtg 7655902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 39098415 - 39098306
Alignment:
Q  13 gcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcat 112  Q
    ||||||||||| || ||||| ||||| |||||||| ||||| | |||  |||| |||||||| || || ||  ||||  | |||||||||||||||||||    
T  39098415 gcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcgatggtaagtcgttttggcatttcatcaattcat 39098316  T
Q  113 gggctgaaat 122  Q
    || |||||||    
T  39098315 ggtctgaaat 39098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 39098086 - 39098047
Alignment:
Q  349 caaaatatcttctctacaagcgcttttaactcacctttgg 388  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  39098086 caaaatatcttctttacaagcacttttaactcacctttgg 39098047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 7633759 - 7633703
Alignment:
Q  335 gagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 391  Q
    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  7633759 gagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 7633703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 8935460 - 8935873
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||||||||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| |||||||||||||||    
T  8935460 aaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatt 8935559  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||| | |    
T  8935560 tcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaac-ggc 8935658  T
Q  201 ccatacgatttcctttcgttt------------------acggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggat 282  Q
    | |||||||||||||||  ||                  ||  |||||  |||||||||| |||||   |||| |||||||||||||| |||||||| ||    
T  8935659 caatacgatttcctttcactttggagcaacaaaagaatcactctgatgggttgagttttttgtcgttagatgatgaaaaactttgtttctcaaatagaat 8935758  T
Q  283 atttcatttcacaaaagagaacattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcac 382  Q
    ||||||||||||||||||||| || ||||| || ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8935759 atttcatttcacaaaagagaaaatcgtacagctgaaattaaaaatcaatgaagagattggtaccatcaaaatatcttctctacaagcgcctttaactcac 8935858  T
Q  383 ctttggtgctctgtg 397  Q
    |||||||||| ||||    
T  8935859 ctttggtgctgtgtg 8935873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 8910525 - 8910709
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 8910624  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaa 185  Q
    |||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8910625 tcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa 8910709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 8934519 - 8934675
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| |||||||||||||||    
T  8934519 aaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatt 8934618  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaac 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  8934619 tcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatttaaac 8934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 8930064 - 8930211
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| ||||||||| |||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||| ||| |||||||||| ||||    
T  8930064 aaaccattgttggcatttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtgacatt 8930163  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaa 148  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  8930164 tcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaa 8930211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 233 - 382
Target Start/End: Original strand, 8910770 - 8910919
Alignment:
Q  233 ttgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaacattgtacaactaaaatcgaaaatcaatg 332  Q
    ||||||||||| |||  |||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||  ||||| | |||||||||||||| |    
T  8910770 ttgagtttttcatcgcttaatgaggaaaaacattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacg 8910869  T
Q  333 atgagattggtaccatcaaaatatcttctctacaagcgcttttaactcac 382  Q
    | ||||| || |||| ||||||||||||||||||||| ||||||||||||    
T  8910870 aagagatcggcaccaccaaaatatcttctctacaagcacttttaactcac 8910919  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 8918868 - 8918924
Alignment:
Q  335 gagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 391  Q
    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  8918868 gagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 8918924  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 15190642 - 15190757
Alignment:
Q  97 catttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 196  Q
    |||||||||||||||  ||||||||| |||||| ||| |||    ||||||||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  15190642 catttcatcaattcactggctgaaatctcacgtggttcttg---ccatcaaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaac 15190738  T
Q  197 agccccatacgatttccttt 216  Q
     | |||||||||||||||||    
T  15190739 -gtcccatacgatttccttt 15190757  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 6501176 - 6501085
Alignment:
Q  92 tgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatg 187  Q
    |||||||||| |||| ||| ||||||||||| |||||| |||||||   | |||||||||| |||| |||| ||||||| |||| |||||||||||    
T  6501176 tgtggcattttatcagttcctgggctgaaatttcacgtggttgttg---taatcaaatatccaaactcccatcactagaacgtt-gtttccaaatg 6501085  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 11969575 - 11969547
Alignment:
Q  94 tggcatttcatcaattcatgggctgaaat 122  Q
    |||||||||||||||||||||||||||||    
T  11969575 tggcatttcatcaattcatgggctgaaat 11969547  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 8103139 - 8103025
Alignment:
Q  98 atttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaaca 197  Q
    ||||||| ||||| ||||||||||| |||||| || |||||    |||||| ||| |||| | ||||||| || |||||||||||| ||||| |||||      
T  8103139 atttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaa-t 8103041  T
Q  198 gccccatacgatttcc 213  Q
    | ||||||||||||||    
T  8103040 gtcccatacgatttcc 8103025  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 40146823 - 40146959
Alignment:
Q  76 gttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgtt 175  Q
    ||||||||||||||    |||| |||||| |||||||||||  |||| || ||| ||||||| ||  ||||| |||| |||| |  ||| ||||| ||||    
T  40146823 gttgacggagagtccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgtt 40146919  T
Q  176 ggtttccaaatggtgttcaacagccccatacgatttccttt 216  Q
    ||||||||| |||| |||||||  |||||||||||||||||    
T  40146920 ggtttccaagtggtattcaaca-tcccatacgatttccttt 40146959  T

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