View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21692_high_5 (Length: 381)
Name: NF21692_high_5
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21692_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 25 - 353
Target Start/End: Original strand, 9041461 - 9041788
Alignment:
| Q |
25 |
catcaactattctcagttttgcactgaacaaaacatttatcttcattcttcttcaccaaaattctttctttcccttgtggatcttgatcttattttctta |
124 |
Q |
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| T |
9041461 |
catcaactattctctgttttacactgaacaaaacatttttttacattcttcttcaccaaaattctttctttcccttgtggatcttgatcttattttctta |
9041560 |
T |
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| Q |
125 |
aaggtttggaaagatacataaatttttgctagatcttttattatgtccgaacttgttcaatattggaccttaaaaacatgactttactttaagaccaccc |
224 |
Q |
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| T |
9041561 |
aaggtttggaaagatacataaatttttgctagatcttttattatgtccgaacttgttcaatattgaaccttaaaaacatgacttttttttaagaccaccc |
9041660 |
T |
|
| Q |
225 |
ttttctttctaacaaaaagaaaagacttccctggtcttttcgccttcttctctttgtaattttatacttcaaacaaaataacattacaaactagagcttg |
324 |
Q |
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| T |
9041661 |
ttttctttctaacaaaaagaaaagacttccctggtcttttccccttcttctctttgtaattttatacttc-aacaaaataacattacaaactagagcttg |
9041759 |
T |
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| Q |
325 |
ttcaaacacattacaaactagagttttgt |
353 |
Q |
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| T |
9041760 |
ttcaaacacattacaaactagagttttgt |
9041788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 43713609 - 43713649
Alignment:
| Q |
59 |
atttatcttcattcttcttcaccaaaattctttctttccct |
99 |
Q |
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|||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
43713609 |
atttttcttcattcttctgcaccaaaattcgttctttccct |
43713649 |
T |
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