View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21692_high_9 (Length: 348)
Name: NF21692_high_9
Description: NF21692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21692_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 26074142 - 26074482
Alignment:
| Q |
1 |
gaagagggtcctagccgcctacttatcgggggagcgctaggggaggatgccagagttgcgttatttaagcttgatagtggtgaggttcttgagtatcaag |
100 |
Q |
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| T |
26074142 |
gaagagggtcctagccgcctacttatcgggggagcgctaggggaggatgccagagttgcgttatttaagcttgatagcggtgaggttcttgagtatcaag |
26074241 |
T |
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| Q |
101 |
tgtttgttaaagcagatagggtttctccgtttgaccttgcggcaagttggagggcttatcaggataatttccgtccttcggccgtacgttggatgcctga |
200 |
Q |
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| T |
26074242 |
tgtttgttaaagcagatagggtttctccgtttgaccttgcggcaagttggagggcttatcaggataatttccgtccttcggccgtacgttggatgcctga |
26074341 |
T |
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| Q |
201 |
tgttagcataaactcagcacctcagacaggtggcgaggtaagaccaaactgctagtttccaatctgttcttttcagtgttgtcaatcgcggaaaatagtg |
300 |
Q |
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| T |
26074342 |
tgttagcataaactcagcacctcagacaggtggcgaggtaagaccaaactgctagtttccaatctgttcttttcggtgttgtcaatcgcggaaaatagtg |
26074441 |
T |
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| Q |
301 |
gtctgttcgacttctgctacgctaccgtgctataacaccaa |
341 |
Q |
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| T |
26074442 |
gtctgttcgacttctgctacgctaccgtgctataacaccaa |
26074482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 10353936 - 10353997
Alignment:
| Q |
273 |
tcagtgttgtcaatcgcggaaaatagtggtctgttcgacttctgctacgctaccgtgctata |
334 |
Q |
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| T |
10353936 |
tcagtgttgtcaattgtggaaaatagtgttgtgttcgaattccgctacgctacagtgctata |
10353997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Complemental strand, 1074945 - 1074911
Alignment:
| Q |
274 |
cagtgttgtcaatcgcggaaaatagtggtctgttc |
308 |
Q |
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| T |
1074945 |
cagtgttgtcaattgcggaaaatagtggtctgttc |
1074911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 30586448 - 30586629
Alignment:
| Q |
63 |
atttaagcttgatagtggtgaggttcttgagtatcaagtgtttgttaaagcagatagggtttctccgtttgaccttgcggcaagttggagggcttatcag |
162 |
Q |
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| T |
30586448 |
atttaagcttgataatgatcatgctgttgagtataaagtatttgttcaagcaagcaaagtttcttcctttgatctggcagctagttggagggcttataag |
30586547 |
T |
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| Q |
163 |
gataatttccgtccttcggccgtacgttggatgcctgatgttagcataaactcagcacctcagacaggtggcgaggtaagac |
244 |
Q |
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| T |
30586548 |
gagaattttcatccttcggctgtacgcgggatacctgacgtcagcataaattcagaagttcagacagaaagcgaggtaagac |
30586629 |
T |
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