View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21693_high_1 (Length: 751)
Name: NF21693_high_1
Description: NF21693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21693_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 602; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 30 - 647
Target Start/End: Original strand, 37157216 - 37157833
Alignment:
| Q |
30 |
atcatatcggtgttagagaagcttagaagaaaactaaaatttagttatgttgttgcctttgacaattcttggtaaatcaggtgttgcacatggatcaaaa |
129 |
Q |
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| T |
37157216 |
atcatatcggtgttagagaagcttagaagaaaactaaaatttagttatgttgttgcctttgacaattcttggtaaatcaggtgttgcacatggatcaaaa |
37157315 |
T |
|
| Q |
130 |
tgactactatggaggggcttccacatctcttaatcttacacaggtcactctcctcttatgcagattttcaatagacgcacttaaagtatatatgttttgt |
229 |
Q |
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| T |
37157316 |
tgactactatggaggggcttccacatctcttaatcttacacaggtcactctcctcttatgcagattttcaatagacgcacgtaaagtatatatgttttgt |
37157415 |
T |
|
| Q |
230 |
ttcatggtagttctcttttcatatcaaagctcattttctgttgtatagctgtttaagcgatataggggagatgacaagccaccagaggaattgggctcta |
329 |
Q |
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| T |
37157416 |
ttcatggtagttctcttttcatatcaaagctcattttctgttgtatagctatttaagcgatataggggagatgacaagccaccagaggaattgggctcta |
37157515 |
T |
|
| Q |
330 |
gccgagaatacaatgttgacatgataccgaaggtaacttttctcatatttcacgacatttagatcaacagaaaatttgatgttagaatttgtatttgttt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157516 |
gccgagaatacaatgttgacatgataccgaaggtaacttttctcatatttcacgacctttagatcaacagaaaatttgatgttagaatttgtatttgttt |
37157615 |
T |
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| Q |
430 |
tttaatttgctgataaagcatcgaaacattaatatttatcggtccttacttgtatgttagcatttgtagacaaggttctgtttctttctatttgagcata |
529 |
Q |
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| T |
37157616 |
tttaatttgctgataaagcatcgaaacattaatatttatcggtccttacttgtatgttagcatttgtagacaaggttctgtttctttctatttgagcata |
37157715 |
T |
|
| Q |
530 |
cagctattttgtaaaacaatttctaatgtgaaaaaactatgcaatttgataaggttctctttcatgcattatatagcttttaattatgcttttttcttgg |
629 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157716 |
cagctattttgtaaaacaatttataatgtgaaaaaactatgcaatttgataaggttctctttcatgcattatatagcttttaattatgcttttttcttgg |
37157815 |
T |
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| Q |
630 |
attctccataatttggac |
647 |
Q |
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| T |
37157816 |
attctccataatttggac |
37157833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 687 - 730
Target Start/End: Original strand, 37157873 - 37157916
Alignment:
| Q |
687 |
acggtgaacccaattttccatctgttttatggtagttgatgatg |
730 |
Q |
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| T |
37157873 |
acggtgaacccaattttccatctgttttatggtagtttatgatg |
37157916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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