View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21693_high_15 (Length: 340)
Name: NF21693_high_15
Description: NF21693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21693_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33381702 - 33381942
Alignment:
| Q |
1 |
catcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaacacggaagtt |
100 |
Q |
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| T |
33381702 |
catcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaaaacggaagtt |
33381801 |
T |
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| Q |
101 |
ttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttgaat |
200 |
Q |
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| T |
33381802 |
ttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttgaat |
33381901 |
T |
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| Q |
201 |
attattgtacatatgttgagtgacaaagattcaggccaatg |
241 |
Q |
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| T |
33381902 |
attattgtacatatgttgagtgacaaagattcaggccaatg |
33381942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 24630485 - 24630323
Alignment:
| Q |
79 |
gagatcagccaacacggaagttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataa |
178 |
Q |
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| T |
24630485 |
gagatcagcaaacatggaagtcttcaacctgcaagaaaaataaaagtattgattttgtaagaagaaatcaacaccataaattgttggaggaaaacaataa |
24630386 |
T |
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| Q |
179 |
taatgctcaaactgttttgaatattattgtacatatgttgagtgacaaagattcaggccaatg |
241 |
Q |
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| T |
24630385 |
taatgctcaaacagttttgaatattattgtacatatgttgagtgacaaagagttaggccaatg |
24630323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33061798 - 33061858
Alignment:
| Q |
1 |
catcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtga |
61 |
Q |
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| T |
33061798 |
catcaacatacaatacgaatggctatcctttatattttaaagcatccctctccttttgtga |
33061858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 33381965 - 33382011
Alignment:
| Q |
264 |
aataatttcataagtgcattaaatttgtatagtttacaagaagcaat |
310 |
Q |
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| T |
33381965 |
aataatttcataagtgcattaaatttatatagtttacaagaagcaat |
33382011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33404379 - 33404443
Alignment:
| Q |
1 |
catcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaa |
65 |
Q |
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||||| ||||||| | ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
33404379 |
catcagcatacaacaagaatggctatcctttatattttaaagcatatctctccatttgtgattaa |
33404443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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