View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21693_high_2 (Length: 531)
Name: NF21693_high_2
Description: NF21693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21693_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 269 - 531
Target Start/End: Original strand, 52003353 - 52003615
Alignment:
| Q |
269 |
agaacctgtggtggtgttgaagattcatcaagtaaggaaccatagatttcattgaaagtgttactgtagtgatcattgttgttatagctttgaggaactt |
368 |
Q |
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| T |
52003353 |
agaatctgtggtggtgttgaagattcatcaagtaaggaaccatagatttcattgaaagtgttactgtagtgatcattgttgttatagctttgaggaactt |
52003452 |
T |
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| Q |
369 |
gttgagtacaagaagagtttggtagatatggtaaagagttttgatcaaaacagttatcaaaactcaagttacttgttgatgagaagaattgattttcttc |
468 |
Q |
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| T |
52003453 |
gttgagtacaagaagagtttggtagatatggtaaagagttttgttcaaaacagttatcaaaactcaagttacttgttgatgagaagaattgattttcttc |
52003552 |
T |
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| Q |
469 |
ttgacttggattggtaatttcatatgtttctcttcttagagccattaattcctccatgaaatc |
531 |
Q |
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| T |
52003553 |
ttgacttggattggtaatttcatatgtttctcttcttagagccattaattcctccatgaaatc |
52003615 |
T |
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Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 37661363 - 37661219
Alignment:
| Q |
57 |
gcattttgcagcaaatagacttaaaaagcatgtggaacttttattgtttcagtttccttttcaaggttacttgattcattgctgtgttaaattccgcagc |
156 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37661363 |
gcattttacaccaaatagacttaaaaagcatgtggaacttttattgtttcagtttccttttcaaggttacttgattcattgctgtgttaaattccgcagc |
37661264 |
T |
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| Q |
157 |
tttcaactagtcaaagctgcaattagactatcgacgttgcactga |
201 |
Q |
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| T |
37661263 |
tttcaactagtcaaagctgcaattagactatcgacattgcactga |
37661219 |
T |
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