View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21693_high_20 (Length: 311)
Name: NF21693_high_20
Description: NF21693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21693_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 42894006 - 42894265
Alignment:
| Q |
23 |
atcatcaccaacacgatcagcgtcggtgtcgccgccgagttcatgtgtttcatctgagaatggatcaagcagccctgaagcaacctccatgctgttagta |
122 |
Q |
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| T |
42894006 |
atcatcaccaacacgatcagcgtcggtgtcgccgccgagttcatgtgtttcatctgagaatggatcaagcagccctgaagcaacctccatgctgttagta |
42894105 |
T |
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| Q |
123 |
ggttgtcctcgttgtctcatgtatgtgatgctctctgagaaggatccaaaatgtccaaaatgtcacagcaccgttttgcttgattttctcaacgctgaga |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894106 |
ggttgtcctcgttgtctcatgtatgtgatgctctctgagaatgatccaaaatgtccaaaatgtcacagcaccgttttgcttgattttctcaacgctgaga |
42894205 |
T |
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| Q |
223 |
acaacaacaataagaagagttagagtaataacagagttagaaacagagtactctgtttca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894206 |
acaacaacaataagaagagttagagtaataacagagttagaaacagagtactctgtttca |
42894265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 25583747 - 25583631
Alignment:
| Q |
92 |
cagccctgaagcaacctccatgctgttagtaggttgtcctcgttgtctcatgtatgtgatgctctctgagaaggatccaaaatgtccaaaatgtcacagc |
191 |
Q |
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|||||| ||||| || |||||| | || || ||||||||||||||||| |||||||| ||||| ||||| | |||||||| || || |||||| | ||| |
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| T |
25583747 |
cagcccagaagccacttccatggttttggttggttgtcctcgttgtcttatgtatgtcatgctttctgaagatgatccaaagtgccctaaatgtaaaagc |
25583648 |
T |
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| Q |
192 |
accgttttgcttgattt |
208 |
Q |
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|| ||||| |||||||| |
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| T |
25583647 |
actgttttacttgattt |
25583631 |
T |
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