View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21693_high_3 (Length: 421)
Name: NF21693_high_3
Description: NF21693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21693_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 27722162 - 27722116
Alignment:
| Q |
30 |
gttacatctcaaacccacataatataaaaccttaaactatgtttttt |
76 |
Q |
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| T |
27722162 |
gttacatctcaaacccacataatataaaaccttaaactatgtttttt |
27722116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 27721886 - 27721838
Alignment:
| Q |
288 |
gaaggtacaaaattctgtgcagtttcaaaagaactgcacaggggttgtt |
336 |
Q |
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| T |
27721886 |
gaaggtataaaattctgtgcagtttcaaaagaactgcacaggggttgtt |
27721838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 27722031 - 27721990
Alignment:
| Q |
152 |
gaccaggatcttcttacgtttttgtaagtacatgaactgcac |
193 |
Q |
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| T |
27722031 |
gaccaggatcttcttacgtttttgtaagtacatgaactgcac |
27721990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 27721842 - 27721807
Alignment:
| Q |
364 |
ttgtttgttattgaggaagaacaacgtgtgatgatg |
399 |
Q |
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| T |
27721842 |
ttgtttgttattgaggaagaacaacgtgtgatgatg |
27721807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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