View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21693_high_7 (Length: 394)
Name: NF21693_high_7
Description: NF21693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21693_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 7805835 - 7806229
Alignment:
| Q |
19 |
catcatcagatctacacatcactccattctcatcatctagaaaatgaatttggttgactttcctcattagaagttgcagccacat--------------- |
103 |
Q |
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| T |
7805835 |
catcagcagatctacacatcactccattctcatcatctagaaaatgaatttggttgactttcctcattagaagttgcagccacatgaaagaatattgtat |
7805934 |
T |
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| Q |
104 |
----atcatctttgtcttcagaacatatcatcttttactagtagcgtagcaatatgtttcttcaatgcattaaaataattcacatttaatgcatctacct |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7805935 |
tcgaatcacctttgtcttcagaacatatcatcttttactagtagagtagcaatatgtttcttcaatgcattaaaataattcacatttgatgcatctacct |
7806034 |
T |
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| Q |
200 |
gagaacgagtgtgcgcaatttgtttttgaagcttcttaaaattctctttacttcactggtgcatgtttcatgcacaattatgaagcttggatataatttg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7806035 |
gagaacgagtgtgcgcaatttgtttttgaagcttcttaaaattctctttacttcattgctgcatgtttcatgcacaattatgaagcttggatataatttg |
7806134 |
T |
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| Q |
300 |
tcttcacaagaagatttccagcaattacagataaagtgatcaaaattaggctcgactaattaaccaaacattttcttttgactggggatgatatc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
7806135 |
tcttcacaagaagatttccagcaattacagataaagtgatcaaaattaggctcgactaattaaccaaacattttcttttgactggagctgatatc |
7806229 |
T |
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