View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21694_high_1 (Length: 466)
Name: NF21694_high_1
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21694_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 45 - 443
Target Start/End: Original strand, 38672440 - 38672838
Alignment:
| Q |
45 |
gttagttgtgaattttgccatctttttagcccttgctcttatgttgatttaaacttggtcatttgtgtttagatgtctgcttattgtatgctgttgtacg |
144 |
Q |
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| T |
38672440 |
gttagttgtgaattttgccatctttttagcccttgctcttatgttgatttaaacttggtcatttgtgtttagatgtctgcttattttatgctgttgtacg |
38672539 |
T |
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| Q |
145 |
tgcagtctgcacaggctatatgtaagctcagtgaagttttgggtgattctctttcttctcaccaagaagttctgcttcagtctcttataaaggaaattcc |
244 |
Q |
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| T |
38672540 |
tgcagtctgcacaggctatatgtaagctcagtgaagttttgggtgattctctttcttctcaccaagaagttctgcttcagtctcttataaaggaaattcc |
38672639 |
T |
|
| Q |
245 |
cggtcgcctatgggaggtaaacaaaacaactagtttatcgagtatgacgacacttaagtttttaacgttacaggaaagattatcttcaaaatttaattgt |
344 |
Q |
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| T |
38672640 |
cggtcgcctatgggaggtaaacaaaaaaactagtttatcgagtatgacgacacttaagtttttaatgttacaggaaagattatcttcaaaatttaattgt |
38672739 |
T |
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| Q |
345 |
agacgaaatgtacttactgcatataacagggaaaagatgtgctattgctagcagtaggttctctatctacatcctgccataaagctatttctgctgatg |
443 |
Q |
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| T |
38672740 |
agacgaaatgtacttactgcatataacagggaaaagatgtgctattgctagcagtaggttctctatctacatcctgccataaagctatttctgctgatg |
38672838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 387
Target Start/End: Original strand, 44720470 - 44720584
Alignment:
| Q |
277 |
gtttatcgagtatgacgacacttaagtttttaacgttacaggaaagattatcttcaaaatttaattgtagacgaaat----gtacttactgcatataaca |
372 |
Q |
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| T |
44720470 |
gtttatcgagtatggcagcacttgagtttttaatgtgacgggaaatattatcttgaaaagttaactgtagacgaaattaagttacttactgcatatggca |
44720569 |
T |
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| Q |
373 |
gggaaaagatgtgct |
387 |
Q |
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| T |
44720570 |
gggaaaatatgtgct |
44720584 |
T |
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