View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21694_high_13 (Length: 313)
Name: NF21694_high_13
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21694_high_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 61 - 313
Target Start/End: Original strand, 9571853 - 9572105
Alignment:
| Q |
61 |
cttcaatctgaattgtcggtgctacatagttggttaatcaacaagcttaaaatcaatgaacagctattttcttcttggacatccatttgcttcgggtggc |
160 |
Q |
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| T |
9571853 |
cttcaatctgaattgtcggtgctacatagttggttaatcaacaagcttaaaatcaatgaacagctattttcttcttggacatccatttgcttcgggtggc |
9571952 |
T |
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| Q |
161 |
ttccaatgcctccaacttcattctagtgagctcctcaatccaatgctgatattgtgactcaatttcatcaagttcaagctttagctcatgatcattatcc |
260 |
Q |
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| T |
9571953 |
ttccaatgcctccaacttcattctagtgagctcctcaatccaatgctgatattgtgactcaatttcatcaagttcaagctttagctcatgatcattatcc |
9572052 |
T |
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| Q |
261 |
ttttcggttgaagacacagaagaacaacaactacttatcaagctcagaacgtt |
313 |
Q |
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| T |
9572053 |
ttttcggttgaagacacagaagaacaacaactacttatcaagctcagaacgtt |
9572105 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 3522115 - 3522085
Alignment:
| Q |
61 |
cttcaatctgaattgtcggtgctacatagtt |
91 |
Q |
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| T |
3522115 |
cttcaatctgaattgtcggtgctacatagtt |
3522085 |
T |
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