View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21694_high_15 (Length: 306)
Name: NF21694_high_15
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21694_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 28101039 - 28101336
Alignment:
| Q |
1 |
aaggtgtatggtcaactaatttatctcacttttcaatgtggcgaggggttgagttctttgggatgctgcgatttgttgagtttgtttctgtcatggtcta |
100 |
Q |
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| T |
28101039 |
aaggtgtatggtcaactaatttatctcacttttcaatgtggcgagggggtgagttctttgggatgctgcgatttgttgagtttgtttctgtcatggtcta |
28101138 |
T |
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| Q |
101 |
attccttaattgattctcggtagtagttctatgtggcttttagcgatgtttcaaaattgtgaggtacggaggctgctgcttggttgttcttctagcctat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28101139 |
attccttaattgcttctcggtagtagttctatgtggtttttagcgatgtttcaaaattgtgaggtacggaggctgctgcttggttgttcttctagcccat |
28101238 |
T |
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| Q |
201 |
aatgtgtttctgttttgctctagagtaatctggttttttggcctgcagtttgtttctaccgtctcctgcaacagtttgtattattcgagtctgtggtg |
298 |
Q |
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| T |
28101239 |
gttgtgtttctgttttgctctagagtaatctggttggttcgcctgcagtttgtttctgccgtctcctgcaactgtttgtattattcgagtctgtggtg |
28101336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 76 - 298
Target Start/End: Original strand, 28103872 - 28104095
Alignment:
| Q |
76 |
ttgagtttgtttctgtcatggtctaattccttaattgattctcggtagtagttctatgtggcttttagcgatgtttcaaaattgtgaggtacggaggctg |
175 |
Q |
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| T |
28103872 |
ttgagtttgtttctgtcaagggctgcttctttgaccggttctcggtagtagttctatgtggattttagcattgtttcagaattgtgaggtgcggaggctg |
28103971 |
T |
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| Q |
176 |
ctgcttggttgttcttctagcctat-aatgtgtttctgttttgctctagagtaatctggttttttggcctgcagtttgtttctaccgtctcctgcaacag |
274 |
Q |
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| T |
28103972 |
atgcttggttattcttctagcctatgtccacgtttatgttttactcttgagaaatctggttggttcacctgcagtttgttttttccatctgctgcatcag |
28104071 |
T |
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| Q |
275 |
tttgtattattcgagtctgtggtg |
298 |
Q |
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||||| ||||||||||| |||||| |
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| T |
28104072 |
tttgtgttattcgagtcagtggtg |
28104095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 298
Target Start/End: Original strand, 26640877 - 26641021
Alignment:
| Q |
155 |
aattgtgaggtacggaggctgctgcttggttgttcttctagcctataat-gtgtttctgttttgctctagagtaatctggttttttggcctgcagtttgt |
253 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||| | | |||| |||||| |||| ||||||||||||| || ||||||||||||| |
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| T |
26640877 |
aattgtgaggcacagaggctgctgcttggttgttcttctagcctgtgtccgcgtttatgtttttctctggagtaatctggttggttcgcctgcagtttgt |
26640976 |
T |
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| Q |
254 |
ttctaccgtctcctgcaacagtttgtattattcgagtctgtggtg |
298 |
Q |
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|||| || ||| ||||| |||||||||||||| ||||| |||||| |
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| T |
26640977 |
ttcttccatctgctgcatcagtttgtattatttgagtcagtggtg |
26641021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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