View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21694_high_16 (Length: 301)

Name: NF21694_high_16
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21694_high_16
NF21694_high_16
[»] chr1 (16 HSPs)
chr1 (21-291)||(48179339-48179609)
chr1 (26-234)||(47873854-47874062)
chr1 (73-233)||(40140972-40141136)
chr1 (79-213)||(2417749-2417886)
chr1 (77-226)||(40027189-40027337)
chr1 (77-234)||(49287413-49287567)
chr1 (19-223)||(33860546-33860750)
chr1 (19-223)||(33920173-33920377)
chr1 (79-214)||(37847219-37847359)
chr1 (23-223)||(45196748-45196954)
chr1 (16-232)||(49440278-49440494)
chr1 (157-239)||(41186128-41186210)
chr1 (23-148)||(49540497-49540622)
chr1 (133-206)||(49540418-49540491)
chr1 (22-55)||(40027131-40027164)
chr1 (79-143)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (22-225)||(14964282-14964485)
chr3 (158-224)||(540434-540500)
chr3 (158-226)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (73-214)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (73-216)||(31266823-31266969)
chr5 (157-198)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (158-221)||(34606051-34606114)
chr6 (158-221)||(34727328-34727391)
chr6 (158-221)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 48179339 - 48179609
Alignment:
Q  21 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179339 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcagtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 48179438  T
Q  121 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179439 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 48179538  T
Q  221 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacttgtggtctctgtg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48179539 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacctgtggtctctgtg 48179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 47873854 - 47874062
Alignment:
Q  26 ggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttc 125  Q
    ||||||||||| ||||||||||||| |||| ||  || |||| |  |||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  47873854 ggatatgagagcaactctgtgtatgccatcagttcttcatctacactatgtagagtgtattcaggggatgataaaaaattgtaaaaatgcattacgcttc 47873953  T
Q  126 cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtac 225  Q
    |||||| ||||||| ||  |||||  ||||  ||||| |||||||| |||| || |||||| || |||| ||||| ||||||||||||||| ||||||||    
T  47873954 cagctcctcatggatcacattccctgatgttggattgttgttttagacatctacgatatgaggttgatttttctccagttgagtaacttgcatattgtac 47874053  T
Q  226 aacgtgtta 234  Q
    | |||||||    
T  47874054 atcgtgtta 47874062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 40140972 - 40141136
Alignment:
Q  73 atgcagtgtgtattcaggagatgataaaaaa-ttgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttt 168  Q
    |||||||||||||||||| |||||||||||| || |||||||| || ||| ||||||||| ||   ||||||||  ||| |||||||  |||||||||||    
T  40140972 atgcagtgtgtattcaggcgatgataaaaaaattacaaaaatgtatcacgtttccagctcctccttatggaacagattctcacatgttggattggtgttt 40141071  T
Q  169 taggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtt 233  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||    
T  40141072 tagacatctacaatatgaggtagattattctctagttgagtaacttgcatgttgtacaccgtgtt 40141136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 2417886 - 2417749
Alignment:
Q  79 tgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttttaggcat 175  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||   ||||||||  ||| |||||||  |||||||||||||| |||    
T  2417886 tgtgtattcaggggatgataaaaaattgcaaaaatgtagtacgcttccagctcctccgtatggaacagattctcacatgttggattggtgttttagacat 2417787  T
Q  176 caacaatatgaagtagattattctctagttgagtaact 213  Q
    | ||||||||| ||||||||||||  ||||||||||||    
T  2417786 ctacaatatgaggtagattattcttcagttgagtaact 2417749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 40027189 - 40027337
Alignment:
Q  77 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 176  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| ||||||||||  |||   |||||  ||||| |||||||| | ||    
T  40027189 agtgtgtattcaggggatggtaaaaaattacaaaaatgtattacgcttccagctcctcatggaacattttctagcatgttggattgatgttttagacctc 40027288  T
Q  177 aacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 226  Q
     || || ||| |||||||||||||| |||||||||||||| |||||||||    
T  40027289 tacgat-tgaggtagattattctcttgttgagtaacttgcatattgtaca 40027337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 234
Target Start/End: Original strand, 49287413 - 49287567
Alignment:
Q  77 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 176  Q
    ||||||||||  || ||||||||||||||| |||||||||||| |||||||||||   ||| | ||  |||| ||||||  |||||||| ||||| ||||    
T  49287413 agtgtgtatttcggggatgataaaaaattgaaaaaatgcattatgcttccagctc---atgcagcacattcctacatgtttgattggtgatttagacatc 49287509  T
Q  177 aacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtta 234  Q
     ||||||||| ||||||||||| |||||||||| |||||  |||| |||| |||||||    
T  49287510 tacaatatgaggtagattattccctagttgagtgacttggatattatacaccgtgtta 49287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 33860546 - 33860750
Alignment:
Q  19 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 118  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33860546 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33860645  T
Q  119 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 218  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33860646 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33860745  T
Q  219 attgt 223  Q
    |||||    
T  33860746 attgt 33860750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 33920377 - 33920173
Alignment:
Q  19 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 118  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33920377 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33920278  T
Q  119 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 218  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33920277 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33920178  T
Q  219 attgt 223  Q
    |||||    
T  33920177 attgt 33920173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 37847219 - 37847359
Alignment:
Q  79 tgtgtattcaggagatgataaaaaattgc-----aaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggc 173  Q
    ||||||||||||||||||||| ||||||      |||||||||||||||||| || | | ||||||||||| | ||||| ||  |||||||| ||||| |    
T  37847219 tgtgtattcaggagatgataacaaattgagaaaaaaaaatgcattacgcttctaggtttccatggaacaagattccacaagtttgattggtgatttagac 37847318  T
Q  174 atcaacaatatgaagtagattattctctagttgagtaactt 214  Q
    ||  || ||||||||||||||||| ||||||||||||||||    
T  37847319 atgtacgatatgaagtagattattttctagttgagtaactt 37847359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 45196748 - 45196954
Alignment:
Q  23 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 122  Q
    |||||||||||| | || ||| |||||| ||||  | |||||||| |  |||| |||| |||||||||  |||||||||||||||||||| ||||||| |    
T  45196748 tggggatatgagtgcaattctatgtatgacatcaatcttttatctacaatatgtagtgcgtattcagggaatgataaaaaattgcaaaaaagcattacac 45196847  T
Q  123 ttc------cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgc 216  Q
    |||      |||||| | ||| |||||  |     |||| ||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||    
T  45196848 ttctagttccagctcctgatgcaacaatgtgtttgatgttcgattggtgttttagacatcaacaatatgagatagattattctctagttaagtaacttgc 45196947  T
Q  217 ttattgt 223  Q
     ||||||    
T  45196948 atattgt 45196954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 49440494 - 49440278
Alignment:
Q  16 gaacctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgc 115  Q
    |||| |||||||||||||||| || ||||| ||||||||| || |||||||| |   ||| |   |||||||| | || ||||||||||  ||||| | |    
T  49440494 gaacatgtggggatatgagagtaattctgtttatgtcatcagtgttttatctacaacatgtatcatgtattcatgggacgataaaaaatcacaaaagtac 49440395  T
Q  116 attacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttg 215  Q
    || |||||||||  || |||||  ||| | | |  ||||| ||||||||||||||| |||| || | ||||||||||||||||||| ||| |||||||||    
T  49440394 atcacgcttccaaatcctcatgatacaggcttctccatgttcgattggtgttttagacatctacgacatgaagtagattattctctggtttagtaacttg 49440295  T
Q  216 cttattgtacaacgtgt 232  Q
    | ||||| |||| ||||    
T  49440294 catattgcacaatgtgt 49440278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 41186128 - 41186210
Alignment:
Q  157 cgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgttattttt 239  Q
    ||||||||| |||||||||| |||||||||  ||||||||| |||||||||||||||||| |||||||||  |||||| ||||    
T  41186128 cgattggtggtttaggcatctacaatatgagatagattattttctagttgagtaacttgcatattgtacattgtgttactttt 41186210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 49540622 - 49540497
Alignment:
Q  23 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 122  Q
    |||||||| ||||| |||||| ||||||||||| || ||  |||| |  |||| |||||||||||||| ||||||||||| || ||||||| |||||       
T  49540622 tggggatacgagagcaactctatgtatgtcatccgtcttggatctacaatatgtagtgtgtattcaggtgatgataaaaagtttcaaaaatacattaaaa 49540523  T
Q  123 ttccagctcttcatggaacaagttcc 148  Q
    ||||||||| ||||| ||||||||||    
T  49540522 ttccagctcctcatgaaacaagttcc 49540497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 49540491 - 49540418
Alignment:
Q  133 tcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttg 206  Q
    ||||||||||||||||  |||||  ||||| ||||||||  ||| || |||||| |||||||||||||||||||    
T  49540491 tcatggaacaagttccttcatgttggattgttgttttagaaatctacgatatgaggtagattattctctagttg 49540418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 40027131 - 40027164
Alignment:
Q  22 gtggggatatgagagaaactctgtgtatgtcatc 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  40027131 gtggggatatgagagtaactctgtgtatgtcatc 40027164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 37850074 - 37850138
Alignment:
Q  79 tgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaa 143  Q
    |||| |||||||  ||||||| |||||| |||||||||||||| ||||| || | ||||||||||    
T  37850074 tgtgcattcagggaatgataacaaattgtaaaaatgcattacgtttccaactttccatggaacaa 37850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 14964282 - 14964485
Alignment:
Q  22 gtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacg 121  Q
    |||||||||||| || |||||||||||||||||| || |||||||| |  |||| ||||||||||| || ||||||||| ||||||||||||||||||||    
T  14964282 gtggggatatgaaagcaactctgtgtatgtcatcagtcttttatctacaatatgtagtgtgtattctggggatgataaacaattgcaaaaatgcattacg 14964381  T
Q  122 cttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 221  Q
    ||||||||||   ||| |||||| | |   |||   |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  14964382 cttccagctccagatgcaacaaggtgcttgatggtagattggtgttttagacatctacaatatgaagtagattattctctagttgagtaatttgcatatt 14964481  T
Q  222 gtac 225  Q
    ||||    
T  14964482 gtac 14964485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 540500 - 540434
Alignment:
Q  158 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgta 224  Q
    |||||||| ||||  |||||||||||||| || ||||||||||||| |||||||| || ||||||||    
T  540500 gattggtgctttaaacatcaacaatatgaggtggattattctctagatgagtaacatggttattgta 540434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 485677 - 485609
Alignment:
Q  158 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 226  Q
    |||||||| ||||| |||||||||||||| || |||| ||||| || |||||||| || ||||||||||    
T  485677 gattggtgctttagacatcaacaatatgaggtggatttttctccagatgagtaacatggttattgtaca 485609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 32347505 - 32347364
Alignment:
Q  73 atgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttagg 172  Q
    |||| |||| |||||||| |||||||||| ||||||||||||||||| ||||||||||| | |||||| ||| |||| || || |||||||||||||||     
T  32347505 atgccgtgtctattcaggggatgataaaagattgcaaaaatgcattatgcttccagctccttatggaaaaagatccctcaagttcgattggtgttttaga 32347406  T
Q  173 catcaacaatatgaagtagattattctctagttgagtaactt 214  Q
    |||| ||||| |||||||||||||||||||||||| ||||||    
T  32347405 catctacaatctgaagtagattattctctagttgaataactt 32347364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 31266823 - 31266969
Alignment:
Q  73 atgcagtgtgtattcaggagatgataaaa---aattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgtttt 169  Q
    ||||| ||| |||||||| ||||||||||   ||||||||||||||||||| |||||| ||| | || |||||||||||   | || ||| | || ||||    
T  31266823 atgcaatgtctattcaggggatgataaaataaaattgcaaaaatgcattacacttccaactcctaatagaacaagttcctttaagttcgactagtatttt 31266922  T
Q  170 aggcatcaacaatatgaagtagattattctctagttgagtaacttgc 216  Q
    ||  ||| || || |||||||||||||||||||||||||||| ||||    
T  31266923 agaaatctacgatctgaagtagattattctctagttgagtaatttgc 31266969  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 1204404 - 1204363
Alignment:
Q  157 cgattggtgttttaggcatcaacaatatgaagtagattattc 198  Q
    ||||||||||||||| |||||||| ||||| |||||||||||    
T  1204404 cgattggtgttttagacatcaacactatgaggtagattattc 1204363  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 34606051 - 34606114
Alignment:
Q  158 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 221  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34606051 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34606114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 34727328 - 34727391
Alignment:
Q  158 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 221  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34727328 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34727391  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 33465708 - 33465645
Alignment:
Q  158 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 221  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||  ||||||| | ||||||||    
T  33465708 gattggtgttttagacatctacaatatgaggtagattatactctttttgagtagcatgcttatt 33465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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