View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21694_high_2 (Length: 389)
Name: NF21694_high_2
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21694_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 28595163 - 28595285
Alignment:
| Q |
267 |
cattcaatttgttccatttgtgcaccgtcgatgcacacactccggcacaaaaattgtttgtcattcggtgcgctagctttagcatgctacgccttcctcc |
366 |
Q |
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| T |
28595163 |
cattcaatttgttccatttgtgcaccgtcgatgcacacactccggcacaaaaattgtttgtcattcggtgcgctagctttagcatgctacgccttcctcc |
28595262 |
T |
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| Q |
367 |
cgcacttattgctacatgttcat |
389 |
Q |
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| T |
28595263 |
cgcacttattgctacatgttcat |
28595285 |
T |
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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 24676848 - 24676947
Alignment:
| Q |
92 |
ctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctccc |
191 |
Q |
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| T |
24676848 |
ctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctccc |
24676947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 12323131 - 12323236
Alignment:
| Q |
274 |
tttgttccatttgtgcaccgtcgatgcacacactccggcacaaaaattgtttgtcattcggtgcgctagctttagcatgctacgccttcctcccgcactt |
373 |
Q |
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| T |
12323131 |
tttgttccatttgtggaccgtggaggcacagacaccggcacagaagttgttagtcattcgttgtgcaagcttcagcatgcttcgccttcctcctgctgtt |
12323230 |
T |
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| Q |
374 |
attgct |
379 |
Q |
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| T |
12323231 |
attgct |
12323236 |
T |
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