View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21694_high_4 (Length: 378)
Name: NF21694_high_4
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21694_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 25 - 361
Target Start/End: Complemental strand, 6003652 - 6003316
Alignment:
| Q |
25 |
atcaccaagagataaatttaaaaggaaaaagttgaaaagcattttactttctttaaatgttatgtaaattgatgttcattaatttttattcaggctatat |
124 |
Q |
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| T |
6003652 |
atcaccaagagataaatttaaaaggaaaaagttgaaaagcattttactttctttaaatgttatgtaaattgatgttcattaatttttattcaggctatat |
6003553 |
T |
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| Q |
125 |
ggccctatagtggacattaccgacctacaaagaagaatttcatggaattcattggcttcttgatggaacacaatgtggacttgacaaatgtaaaggtaaa |
224 |
Q |
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| T |
6003552 |
ggccctatagtggacattaccgacctacaaagaagaatttcatggaattcattggcttcttgatggaacacaatgtggacttgacaaatgtaaaggtaaa |
6003453 |
T |
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| Q |
225 |
ttcataacttccaaagaaattttccctatataaattagcctatttttgctttgatttgaaatcactaaacatccacatgattaaacttatgtacaaacat |
324 |
Q |
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| T |
6003452 |
ttcataacttccaaataaattttccctatataaattagcctatttttgctttgatttgaaatcactaaacatccacatgattaaacttatgtacaaacat |
6003353 |
T |
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| Q |
325 |
ttccttatgcagaaatatccaattgatgatgatgtcc |
361 |
Q |
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| T |
6003352 |
ttccttatgcagaaatatccaattgatgatgatgtcc |
6003316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 42816165 - 42816070
Alignment:
| Q |
108 |
ttttattcaggctatatggccctatagtggacattaccgacctacaaagaagaatttcatggaattcattggcttcttgatggaacacaatgtgga |
203 |
Q |
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| T |
42816165 |
ttttattcaggttatttggccctatagtggccactatcgtccaacagagaagaatcttaaggaattcattcgcttcttggaggaacatcatgtgga |
42816070 |
T |
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