View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21694_high_5 (Length: 360)

Name: NF21694_high_5
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21694_high_5
NF21694_high_5
[»] chr7 (10 HSPs)
chr7 (259-359)||(35073965-35074067)
chr7 (290-359)||(35100732-35100802)
chr7 (311-359)||(35085466-35085514)
chr7 (272-359)||(42795344-42795434)
chr7 (90-127)||(42795614-42795651)
chr7 (151-203)||(42795502-42795554)
chr7 (151-194)||(35085284-35085327)
chr7 (158-201)||(43026940-43026983)
chr7 (290-332)||(43026796-43026838)
chr7 (151-194)||(35100591-35100634)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 35073965 - 35074067
Alignment:
Q  259 gatgaaaatcacatga-ttttacaaacataaataagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgttt 356  Q
    |||||||||| ||||| ||||||||  || | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  35073965 gatgaaaatcgcatgaattttacaatgatgattaagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttattgtacctgttt 35074064  T
Q  357 ctg 359  Q
    |||    
T  35074065 ctg 35074067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 35100732 - 35100802
Alignment:
Q  290 taagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgtttctg 359  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  35100732 taagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttatcgtacctgtttctg 35100802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 35085466 - 35085514
Alignment:
Q  311 aagagatatagagatacttgagaaaagcagcttatcgtacctgtttctg 359  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35085466 aagagagatagagatacttgagaaaagcagcttatcgtacctgtttctg 35085514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 359
Target Start/End: Complemental strand, 42795434 - 42795344
Alignment:
Q  272 tgattttacaaacataaataagtatcgcttggagagtagaagagatatagagatacttg----agaaaagcagcttatcgtacctgtttctg 359  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||    || |||| ||||||||| |||||||||||    
T  42795434 tgattttacaa-cataaataagtatcgcttggagagtataagagagatagagataattgataaagtaaagtagcttatcgcacctgtttctg 42795344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 42795651 - 42795614
Alignment:
Q  90 atgacgggatgggcctcccactcataaaaggagcagag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42795651 atgacgggatgggcctcccactcataaaaggagcagag 42795614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 42795554 - 42795502
Alignment:
Q  151 aatcgaaaccagacaacacttataaacccgcactgaattacccctcaacatcg 203  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  42795554 aatcgaaaccagctaacacttataaacccgcactgagttacccctccacatcg 42795502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 35085284 - 35085327
Alignment:
Q  151 aatcgaaaccagacaacacttataaacccgcactgaattacccc 194  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  35085284 aatccaaaccagacgacacttataaacccgcactgaattacccc 35085327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 43026983 - 43026940
Alignment:
Q  158 accagacaacacttataaacccgcactgaattacccctcaacat 201  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  43026983 accagacgacacttataaacccgcactgaattacccctccacat 43026940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 43026838 - 43026796
Alignment:
Q  290 taagtatcgcttggagagtagaagagatatagagatacttgag 332  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  43026838 taagtatcgcttggatagtagaagagagatagagatacttgag 43026796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 35100591 - 35100634
Alignment:
Q  151 aatcgaaaccagacaacacttataaacccgcactgaattacccc 194  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||    
T  35100591 aatccaaaccagacgacacttataaacccgcattgaattacccc 35100634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University