View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21694_high_6 (Length: 353)
Name: NF21694_high_6
Description: NF21694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21694_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 111 - 299
Target Start/End: Complemental strand, 44166737 - 44166559
Alignment:
| Q |
111 |
gtcacaaaacaaatggctaatgcatgcaataaggaggttgacgacagattcgacggcagtatgaac-gaatacgacgatgccgatgtgggg-tatggaag |
208 |
Q |
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| T |
44166737 |
gtcacaaaacaaatggctaatgcatgcaataaggaggttgacgacag------------tatgaaaagaatacgacgatgccgatgtgggggtatggaag |
44166650 |
T |
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| Q |
209 |
gcggtgtatatgcgttggttgtgtcccacggcgagaatgaaaagaaaatgccatggaagcactttgacaccacctagttatagaagatgtt |
299 |
Q |
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| T |
44166649 |
gcggtgtatatgcgttggttgtgtcccgcggcgagaatgaaaagaaaatgccatggaagcactttgacaccacctagttatagaagatgtt |
44166559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 38304077 - 38304173
Alignment:
| Q |
70 |
ttagacatttaattaccccacctcttcattgagtctcacgtgtcacaaaacaaatggctaatgcatgcaataaggaggttgacgacagattcgacgg |
166 |
Q |
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| T |
38304077 |
ttagacatttaattaccccacctcttcattcagtctcacgtgtcataaaacaaatggctaatgcatgcaataaggaggttcatcacagattcgacgg |
38304173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 38304244 - 38304288
Alignment:
| Q |
199 |
ggtatggaaggcggtgtatatgcgttggttgtgtcccacggcgag |
243 |
Q |
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| T |
38304244 |
ggtatggaaggcgatgtatatgggttggttgtgtcccgcggcgag |
38304288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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