View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21695_high_1_N (Length: 469)

Name: NF21695_high_1_N
Description: NF21695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21695_high_1_N
NF21695_high_1_N
[»] chr3 (4 HSPs)
chr3 (4-433)||(37486893-37487316)
chr3 (276-366)||(3987016-3987108)
chr3 (276-321)||(11581460-11581505)
chr3 (285-365)||(22902776-22902857)
[»] chr7 (3 HSPs)
chr7 (276-350)||(36514428-36514502)
chr7 (276-347)||(1740791-1740862)
chr7 (276-360)||(19262654-19262738)
[»] chr8 (3 HSPs)
chr8 (284-366)||(30456441-30456525)
chr8 (276-345)||(34196064-34196133)
chr8 (298-350)||(25985506-25985558)
[»] chr6 (1 HSPs)
chr6 (276-366)||(33084027-33084119)
[»] chr5 (5 HSPs)
chr5 (298-367)||(3097143-3097212)
chr5 (277-366)||(11002645-11002734)
chr5 (276-350)||(31636141-31636215)
chr5 (276-366)||(33667187-33667277)
chr5 (315-360)||(32516533-32516578)
[»] chr2 (3 HSPs)
chr2 (276-365)||(23714482-23714570)
chr2 (276-365)||(24102154-24102242)
chr2 (276-366)||(9578924-9579014)
[»] chr1 (2 HSPs)
chr1 (298-366)||(39422285-39422354)
chr1 (274-347)||(26016427-26016500)
[»] chr4 (7 HSPs)
chr4 (284-347)||(35555876-35555939)
chr4 (276-347)||(54470197-54470268)
chr4 (287-366)||(10775654-10775735)
chr4 (284-367)||(17900448-17900533)
chr4 (276-366)||(36557251-36557342)
chr4 (278-326)||(42285923-42285971)
chr4 (274-350)||(42293468-42293544)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 433
Target Start/End: Original strand, 37486893 - 37487316
Alignment:
Q  4 gagtttggtgttgccagtatcatctcacctttctaatagtcgttgcaaccatcacaaacacttcttctacaacct-gtacgatacaatgagatggacatc 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||| || ||    
T  37486893 gagtttgttgttgccagtatcatctcacctttctaatagtcgttgcaaccatcacaaacacttcttctacaacctagtacaataca-tg-gatg-acctc 37486989  T
Q  103 atcatgcattttaaagtagcgccgcattacaagataaccgtttctttgcaaatgcaatgttagnnnnnnnnnnnnnnnnnnnnnngtaagtagcaatcaa 202  Q
     ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||                      |||||||||||||||    
T  37486990 gtcatgcattttaaagtagcaccgcattacaagataaccgtgtctttgcaaatgcaatgttagaaaaagaaaataaaaactaaaagtaagtagcaatcaa 37487089  T
Q  203 aaccaatggtctcttttgtggcatacactggtttcccttgttcacagtatgagtggatggtggaaccatattttctacatacccaaaccacataggtcta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37487090 aaccaatggtctcttttgtggcatacactggtttcccttgttcacagtatgagtggatggtggaaccatattttctacatgcccaaaccacataggtcta 37487189  T
Q  303 gtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatttaaatttaattttcatcatgatagaaaccaacgatg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||| | ||||||||||||||||    
T  37487190 gtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcattt----tttaaatttatttttcatcgtaatagaaaccaacgatg 37487285  T
Q  403 ctcttcattcaaaacaatggactgaactttt 433  Q
     ||||||||||||||||||||||||||||||    
T  37487286 atcttcattcaaaacaatggactgaactttt 37487316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 3987108 - 3987016
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct--aatatcgtcatttttaatt 366  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | ||||||||||  ||||||||||||| |||||    
T  3987108 tctacattcccaaaccacctaagtctagtttctaccatcttttctactataggtgataccccaactctctctccaatatcgtcatttctaatt 3987016  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 11581505 - 11581460
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttcta 321  Q
    |||||||||||||||||| || |||||||||||| ||| |||||||    
T  11581505 tctacatacccaaaccacctaagtctagtttctaccatcttttcta 11581460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 22902857 - 22902776
Alignment:
Q  285 ccaaaccacataggtctagtttctaacatatttt-ctactatatgtgttactcaaactctctctaatatcgtcatttttaat 365  Q
    |||||| || || |||||||||||| ||| |||| | |||||| ||| |||||||||||||||||||||  |||||| ||||    
T  22902857 ccaaacaacctaagtctagtttctaccatctttttcgactataggtgctactcaaactctctctaatattttcatttctaat 22902776  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 36514428 - 36514502
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 350  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | |||||||||||||    
T  36514428 tctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctctctaat 36514502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 1740862 - 1740791
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 347  Q
    |||||||||||||||||| || | |||||||| | ||||||||||||| ||  || ||| ||||||||||||    
T  1740862 tctacatacccaaaccacctaagcctagtttccaccatattttctactgtagatgctacccaaactctctct 1740791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 19262654 - 19262738
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcattt 360  Q
    ||||||| | |||||||| || | | |||||||| ||| |||||||| ||| ||| ||| | ||||||||||||||| |||||||    
T  19262654 tctacatgctcaaaccacctaagccaagtttctaccatcttttctacaataggtgctaccccaactctctctaatattgtcattt 19262738  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 366
Target Start/End: Original strand, 30456441 - 30456525
Alignment:
Q  284 cccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaac--tctctctaatatcgtcatttttaatt 366  Q
    ||||||||||||| |||||||||||| ||| |||||||||||| |||  |||| |||  |||||||||| ||||||||| |||||    
T  30456441 cccaaaccacataagtctagtttctaccatcttttctactataggtgcaactcgaactatctctctaatgtcgtcatttctaatt 30456525  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 34196133 - 34196064
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctct 345  Q
    ||||||| ||||||||||||| ||||||||||||   | |||||||||||| ||| ||| | ||||||||    
T  34196133 tctacatgcccaaaccacataagtctagtttctactgttttttctactataggtgctaccccaactctct 34196064  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 25985558 - 25985506
Alignment:
Q  298 gtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 350  Q
    |||||||||||| ||| |||||||||||| ||| ||| | |||||||||||||    
T  25985558 gtctagtttctaccatcttttctactataggtgctaccccaactctctctaat 25985506  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 33084119 - 33084027
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaa--ctctctctaatatcgtcatttttaatt 366  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||| ||| ||| ||| | ||  ||||||||||||||||||||| |||||    
T  33084119 tctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttctaatt 33084027  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 3097212 - 3097143
Alignment:
Q  298 gtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaattt 367  Q
    |||||||||||| ||| ||||||| |||| ||||||| | |||||||| |||| ||||||||||||||||    
T  3097212 gtctagtttctagcatcttttctaatataggtgttaccccaactctctataatgtcgtcatttttaattt 3097143  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 366
Target Start/End: Original strand, 11002645 - 11002734
Alignment:
Q  277 ctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatt 366  Q
    |||||| |||||||||| || |||||||||||| ||| ||||||||| || ||| ||| | ||||||||||||| | ||||||| |||||    
T  11002645 ctacatgcccaaaccacctaagtctagtttctaccatgttttctactgtaggtgctacccgaactctctctaatgttgtcatttctaatt 11002734  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 31636141 - 31636215
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 350  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | |||| ||||||||    
T  31636141 tctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttctctaat 31636215  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 33667277 - 33667187
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatt 366  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | |||||||  |||| | ||||||| |||||    
T  33667277 tctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctcgttaatgttgtcatttctaatt 33667187  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 32516578 - 32516533
Alignment:
Q  315 ttttctactatatgtgttactcaaactctctctaatatcgtcattt 360  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||    
T  32516578 ttttctactataagtgttactccaactctctctaatgttgtcattt 32516533  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 23714482 - 23714570
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaat 365  Q
    ||||||| || |||| ||||| |||||||||| | ||| |||||||||||||||| ||| | |||||| |||||| ||||||||||||||    
T  23714482 tctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctac-ccaactctatctaatgtcgtcatttttaat 23714570  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 24102154 - 24102242
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaat 365  Q
    ||||||| || |||| ||||| |||||||||| | ||| |||||||||||||||| ||| | |||||| |||||| ||||||||||||||    
T  24102154 tctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgctac-ccaactctatctaatgtcgtcatttttaat 24102242  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 9578924 - 9579014
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaatatcgtcatttttaatt 366  Q
    |||||||  ||||||||| || ||||| |||  | ||| ||| ||||||||||||| || | |||||||||||| || |||||||||||||    
T  9578924 tctacatgtccaaaccacctaagtctattttacatcatctttactactatatgtgtcaccccaactctctctaacattgtcatttttaatt 9579014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 39422285 - 39422354
Alignment:
Q  298 gtctagtttctaacatattttctactatatgtgttactcaaactctc-tctaatatcgtcatttttaatt 366  Q
    ||||||||||||  || |||||||||||||||||||||| ||||||| |||||||| ||||||| |||||    
T  39422285 gtctagtttctactatcttttctactatatgtgttactccaactctcttctaatattgtcatttctaatt 39422354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 26016500 - 26016427
Alignment:
Q  274 tttctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 347  Q
    |||||||||||||||||||| ||  ||||||||||| ||| ||||||  |||| ||||||| | ||||||||||    
T  26016500 tttctacatacccaaaccacctaaatctagtttctaccatcttttctcatataggtgttaccccaactctctct 26016427  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 35555876 - 35555939
Alignment:
Q  284 cccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 347  Q
    |||||||||| || |||||||||||| ||| |||||||||||| ||| ||| | ||||||||||    
T  35555876 cccaaaccacctaagtctagtttctaccatcttttctactataggtgctacccgaactctctct 35555939  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 54470268 - 54470197
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct 347  Q
    ||||||| |||||||||| || |||||||||| | ||| |||||||||||| ||| ||| | ||||||||||    
T  54470268 tctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctaccccaactctctct 54470197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 10775654 - 10775735
Alignment:
Q  287 aaaccacataggtctagtttctaacatattttctactatatgtgttactc--aaactctctctaatatcgtcatttttaatt 366  Q
    ||||||| || |||||||||||| ||| |||||||||||| ||||||| |  | |||||||||||| | ||||||| |||||    
T  10775654 aaaccacctatgtctagtttctaccatcttttctactataggtgttaccccaacactctctctaatgttgtcatttctaatt 10775735  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 17900533 - 17900448
Alignment:
Q  284 cccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactc--tctctaatatcgtcatttttaattt 367  Q
    ||||||||||||  |||||||||||| | | |||||||||||| ||| ||| | |||||  |||||||| ||||||||| ||||||    
T  17900533 cccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccccaactccgtctctaatgtcgtcatttctaattt 17900448  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 36557251 - 36557342
Alignment:
Q  276 tctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctct--aatatcgtcatttttaatt 366  Q
    ||||||| |||||||||| || |||||||||||| ||| |||||||||||  ||| | | | ||||||||||  ||||||||||||| |||||    
T  36557251 tctacattcccaaaccac-taagtctagtttctaccatcttttctactatgggtgctgccccaactctctctccaatatcgtcatttctaatt 36557342  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 42285923 - 42285971
Alignment:
Q  278 tacatacccaaaccacataggtctagtttctaacatattttctactata 326  Q
    ||||| |||||||||| || |||||||||||| ||| ||||||||||||    
T  42285923 tacatgcccaaaccacctaagtctagtttctaccatcttttctactata 42285971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 42293468 - 42293544
Alignment:
Q  274 tttctacatacccaaaccacataggtctagtttctaacatattttctactatatgtgttactcaaactctctctaat 350  Q
    |||||||||||||||||||| || | | |||||| | ||| |||||||||||| ||| ||| | ||||||| |||||    
T  42293468 tttctacatacccaaaccacctaagccgagtttccatcatcttttctactataggtgctacgccaactctcgctaat 42293544  T

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